| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001918 |
| Family | CBM43 |
| Protein Properties | Length: 481 Molecular Weight: 52645.8 Isoelectric Point: 7.782 |
| Chromosome | Chromosome/Scaffold: 03 Start: 19340109 End: 19341766 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM43 | 391 | 473 | 4.3e-27 |
| WCVAVEGASEAELQQALNFACGQSNATCAALAPGRECYAPVSLTWHASYAFSSYWAQFRNQSSRCYFNGLARETTTNPGNEHC | |||
| GH17 | 41 | 365 | 0 |
| IGINYGRFGNNLPSPYQSINLIKSINAGHVKLYDADPETLMVLSQTNLYVTIMVPNNHIIPIGADQAAADNWVNTNVLAHYPQTKIRFVLVGNEILSNNS DQDKQTWSSLVPAMRKIVTSLRARGIHNIKVGTPLAMDVLRTSFPPSSGAFREEVAALVMLPLLKFLNGTNSFFFLDVYPYFPWSTDPVNNPLDFALFQS NSTYTDPQTGLVYTNLLDQMLDSVIFAMTKLGYPNVRLAISETGWPNSGDIDETGANILNAATYNRNLIKKMTANPPLGTPARPGSPIPTFLFSLFNENQ KPGSGTERHWGILKPDGTQIYEIDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 481 Download |
| MSSPMASFAL FFFTLIVLSS SCRYAIGSPN NKTFLSLASR IGINYGRFGN NLPSPYQSIN 60 LIKSINAGHV KLYDADPETL MVLSQTNLYV TIMVPNNHII PIGADQAAAD NWVNTNVLAH 120 YPQTKIRFVL VGNEILSNNS DQDKQTWSSL VPAMRKIVTS LRARGIHNIK VGTPLAMDVL 180 RTSFPPSSGA FREEVAALVM LPLLKFLNGT NSFFFLDVYP YFPWSTDPVN NPLDFALFQS 240 NSTYTDPQTG LVYTNLLDQM LDSVIFAMTK LGYPNVRLAI SETGWPNSGD IDETGANILN 300 AATYNRNLIK KMTANPPLGT PARPGSPIPT FLFSLFNENQ KPGSGTERHW GILKPDGTQI 360 YEIDFSGTRP VPSPGSLPKP SNNVPFKGNV WCVAVEGASE AELQQALNFA CGQSNATCAA 420 LAPGRECYAP VSLTWHASYA FSSYWAQFRN QSSRCYFNGL ARETTTNPGN EHCTFPSVTL 480 * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.002 | 275 | 356 | 85 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 6.0e-18 | 391 | 461 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-31 | 391 | 475 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-127 | 41 | 365 | 326 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM64490.1 | 0 | 19 | 480 | 15 | 476 | beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| GenBank | ABK28569.1 | 0 | 19 | 480 | 15 | 476 | unknown [Arabidopsis thaliana] |
| EMBL | CAA49513.1 | 0 | 10 | 480 | 1 | 474 | beta-1,3-glucanase homologue [Brassica napus] |
| RefSeq | NP_189019.1 | 0 | 19 | 480 | 15 | 476 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_193144.1 | 0 | 5 | 480 | 1 | 478 | MEE48 (maternal effect embryo arrest 48); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 41 | 365 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 41 | 365 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 41 | 365 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghr_A | 0 | 41 | 365 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1aq0_B | 0 | 41 | 365 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
