| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001928 |
| Family | CE8 |
| Protein Properties | Length: 329 Molecular Weight: 36422.5 Isoelectric Point: 9.4427 |
| Chromosome | Chromosome/Scaffold: 03 Start: 19397489 End: 19398948 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 27 | 315 | 0 |
| VFVDQSGHSNFTKIQKAIDSVPVNNRHWFFINVAAGVYREKIKIPYDKPFIVIVGAGKRNTRVEWDDHDSVAQSPTFASVADNTVVKSLTFVNTYNFPNK GKVNRNPRIPAVAALINGDKCAFYSVGFSGVQDTLWDADGRHFFHRCTIQGAVDFIFGNGQSIYKKCVINVLGATLKPGVTGYITAQGRTNSYDASGFVF MDSLVYGSGKAFLGRPWRSYARVIFYNTDLTDVVVPQGWDSWHFGGHVSQLTFAEIGCYGSGSNTGRRVSWVKKLSGFSVQSLINLDFI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 329 Download |
| MGNRRLFIAL FCCFCLPHII EAYHQQVFVD QSGHSNFTKI QKAIDSVPVN NRHWFFINVA 60 AGVYREKIKI PYDKPFIVIV GAGKRNTRVE WDDHDSVAQS PTFASVADNT VVKSLTFVNT 120 YNFPNKGKVN RNPRIPAVAA LINGDKCAFY SVGFSGVQDT LWDADGRHFF HRCTIQGAVD 180 FIFGNGQSIY KKCVINVLGA TLKPGVTGYI TAQGRTNSYD ASGFVFMDSL VYGSGKAFLG 240 RPWRSYARVI FYNTDLTDVV VPQGWDSWHF GGHVSQLTFA EIGCYGSGSN TGRRVSWVKK 300 LSGFSVQSLI NLDFINSGGW VQALPIPV* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02682 | PLN02682 | 2.0e-74 | 32 | 322 | 303 | + pectinesterase family protein | ||
| PLN02480 | PLN02480 | 1.0e-79 | 29 | 323 | 296 | + Probable pectinesterase | ||
| PLN02432 | PLN02432 | 1.0e-81 | 29 | 322 | 294 | + putative pectinesterase | ||
| PLN02176 | PLN02176 | 1.0e-96 | 27 | 326 | 301 | + putative pectinesterase | ||
| PLN02497 | PLN02497 | 0 | 1 | 326 | 333 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB01354.1 | 0 | 1 | 327 | 1 | 330 | pectin methylesterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_189055.1 | 0 | 1 | 327 | 1 | 334 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_197400.1 | 0 | 1 | 328 | 1 | 330 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002323773.1 | 0 | 27 | 326 | 1 | 289 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518106.1 | 0 | 27 | 326 | 48 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 6e-37 | 27 | 327 | 9 | 314 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 9e-28 | 29 | 297 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 1e-18 | 4 | 306 | 11 | 354 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 1e-16 | 23 | 266 | 4 | 280 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 1e-16 | 23 | 266 | 4 | 280 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
