| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001937 |
| Family | GH14 |
| Protein Properties | Length: 565 Molecular Weight: 62991.2 Isoelectric Point: 6.3484 |
| Chromosome | Chromosome/Scaffold: 03 Start: 19462181 End: 19464344 |
| Description | beta-amylase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 98 | 520 | 0 |
| FVMMPLDSVTMGNAVNRRKAMRASLQALRSGGVEGIMIDVWWGLVEREAPGGYNWGGYDEVLEMARKVGLKVQAVMSFHQCGGNVGDSVTIPLPQWVVEE VDNDPDLGYTDQWGRRNHEYISLGADTLPLLKGRTPVQCYSDFMRAFRDNFRHLLGDTIVEIQVGMGPAGELRYPSYPEQDGTWKFPGIGAFQCYDKYSL SSLKAAAEAYGKPEWGSTGPTDAGHYNNWPEDTHFFKKEDGGWNTEYGEFFLTWYSQMLLDHGERILSSAKSIFESTSVKISAKVAGIHWHYGTRSHAPE LTAGYYNTRFRDGYLPIAQMLARHKAVFNFTCIEMRDHEQPQDALCAPEQLVNQVALATLASEVPLAGENALPRYDDYAHEQILKASALIFDRNNEGESR EMCAFTYLRMNPELFRAENWGRF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 565 Download |
| MALRLPHQLG ALAGAPIKSR EITTASPVNS SLSVSPPLAR MHKAMDLNHK PRRMNPVLAT 60 AQADLSVACK AFAVETTEER RTHKEGRVGG GGGGVPVFVM MPLDSVTMGN AVNRRKAMRA 120 SLQALRSGGV EGIMIDVWWG LVEREAPGGY NWGGYDEVLE MARKVGLKVQ AVMSFHQCGG 180 NVGDSVTIPL PQWVVEEVDN DPDLGYTDQW GRRNHEYISL GADTLPLLKG RTPVQCYSDF 240 MRAFRDNFRH LLGDTIVEIQ VGMGPAGELR YPSYPEQDGT WKFPGIGAFQ CYDKYSLSSL 300 KAAAEAYGKP EWGSTGPTDA GHYNNWPEDT HFFKKEDGGW NTEYGEFFLT WYSQMLLDHG 360 ERILSSAKSI FESTSVKISA KVAGIHWHYG TRSHAPELTA GYYNTRFRDG YLPIAQMLAR 420 HKAVFNFTCI EMRDHEQPQD ALCAPEQLVN QVALATLASE VPLAGENALP RYDDYAHEQI 480 LKASALIFDR NNEGESREMC AFTYLRMNPE LFRAENWGRF VGFVKRMGEG RDSHRCWEEV 540 EREAEHFVHV TQPLVQEAAV ALTH* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01373 | Glyco_hydro_14 | 1.0e-137 | 100 | 523 | 435 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
| PLN02905 | PLN02905 | 6.0e-138 | 100 | 527 | 433 | + beta-amylase | ||
| PLN02801 | PLN02801 | 3.0e-180 | 100 | 532 | 435 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 1 | 564 | 576 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 0 | 100 | 530 | 431 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL37169.1 | 0 | 1 | 564 | 1 | 569 | AF319168_1 putative chloroplast-targeted beta-amylase [Brassica napus] |
| EMBL | CAN71375.1 | 0 | 3 | 564 | 1 | 570 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_189034.1 | 0 | 1 | 564 | 1 | 575 | BAM1 (BETA-AMYLASE 1); beta-amylase [Arabidopsis thaliana] |
| RefSeq | XP_002285569.1 | 0 | 2 | 564 | 3 | 573 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002518196.1 | 0 | 1 | 564 | 1 | 574 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdp_A | 0 | 95 | 532 | 12 | 446 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose |
| PDB | 1q6c_A | 0 | 95 | 532 | 12 | 446 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1bfn_A | 0 | 95 | 532 | 12 | 446 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1v3i_A | 0 | 95 | 532 | 12 | 446 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1v3h_A | 0 | 95 | 532 | 12 | 446 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO779314 | 410 | 153 | 562 | 0 |
| EG518392 | 307 | 109 | 415 | 0 |
| HO798206 | 348 | 215 | 562 | 0 |
| HO826564 | 408 | 151 | 558 | 0 |
| DT555349 | 322 | 182 | 503 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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