| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra001991 |
| Family | GH35 |
| Protein Properties | Length: 813 Molecular Weight: 91735.1 Isoelectric Point: 9.7644 |
| Chromosome | Chromosome/Scaffold: 10 Start: 12436431 End: 12440527 |
| Description | glycosyl hydrolase family 35 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 50 | 354 | 0 |
| LIINGKRELLYSGSIHYPRSTPDMWPKIIKRAKQGGLNTIQTYVFWNVHEPVQGKFNFSGRADLVKFIKLIEKNGMYVTLRPGPFIQAEWNHGGLPYWLR EVPGIFFRTDNKPFKEHTERYVKVILDKMKEEKLFASQGGPIILGQIENEYSAVERAYKEDGVNYIKWAAKLVDSMNLGIPWVMCKHNSAPDPMINACNG RHCGDTFPGPNKKNKPSLWTENWTTQFRVFGDPPAHRSVEDIAYSVARFFSKNGSHVNYYMYHGGTNFGRTSAHYVTTRYYDDAPLDEFGLEREPKYGHL KLLHN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 813 Download |
| MRIHSSNHPW FLLAILVVLL SFSGALSSTH KEKTTSKNPK KEVTYDGTSL IINGKRELLY 60 SGSIHYPRST PDMWPKIIKR AKQGGLNTIQ TYVFWNVHEP VQGKFNFSGR ADLVKFIKLI 120 EKNGMYVTLR PGPFIQAEWN HGGLPYWLRE VPGIFFRTDN KPFKEHTERY VKVILDKMKE 180 EKLFASQGGP IILGQIENEY SAVERAYKED GVNYIKWAAK LVDSMNLGIP WVMCKHNSAP 240 DPMINACNGR HCGDTFPGPN KKNKPSLWTE NWTTQFRVFG DPPAHRSVED IAYSVARFFS 300 KNGSHVNYYM YHGGTNFGRT SAHYVTTRYY DDAPLDEFGL EREPKYGHLK LLHNALNLCK 360 KALLWGHSRT EKPGKDTEIR YYEQPGTKVC AAFLANNNTE AAETIKFKGK EHVIPPRSIS 420 ILPDCKTVVY STAEVISQHT SRNYVKSKKA NKKFDFKVFT ETVPGELKGE SFIPVELYGL 480 TEDVTDYGWY TTNFKIDDND LKKKGGKTTL RIASLGHALH VWLNGEYLGF PDSGSYLEHR 540 YTGPRSVSIL GLSSGPLDLT EKNKWGNKVG MEGEKLGIHA EKGLKKVKWQ KFSGKAPGLT 600 WYQTRFDAPE SKNSVAIRMN GMGKGLIWVN GEGVGRYWMS FLSPLKNPTQ VEYHIPRSFL 660 KPKKNLLVIF EEEPNVKPEL IDFVIINRDT VCSYIGENYT PSVRHWTKKN DKVQAIADDV 720 FLTANLKCSG TKKIAAVEFA SFGNPTGTCG NFTLGSCNAP ASKQVIEKYC LGKSECDIPV 780 NKSTFQQDKK DSCPKVVKML AVQVKCGRTN KN* 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02449 | Glyco_hydro_42 | 8.0e-10 | 65 | 200 | 150 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
| pfam02140 | Gal_Lectin | 3.0e-19 | 726 | 806 | 84 | + Galactose binding lectin domain. | ||
| COG1874 | LacA | 2.0e-22 | 43 | 359 | 366 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam01301 | Glyco_hydro_35 | 6.0e-153 | 49 | 356 | 322 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 43 | 806 | 827 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD24606.1 | 0 | 46 | 812 | 31 | 832 | putative beta-galactosidase [Arabidopsis thaliana] |
| EMBL | CAA17766.1 | 0 | 41 | 812 | 52 | 831 | beta-galactosidase-like protein [Arabidopsis thaliana] |
| EMBL | CAB64750.1 | 0 | 2 | 806 | 6 | 837 | putative beta-galactosidase [Arabidopsis thaliana] |
| RefSeq | NP_179264.2 | 0 | 42 | 812 | 43 | 848 | BGAL13; beta-galactosidase [Arabidopsis thaliana] |
| RefSeq | NP_567973.1 | 0 | 41 | 812 | 39 | 845 | BGAL11 (beta-galactosidase 11); beta-galactosidase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 3.99931e-42 | 49 | 356 | 14 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 5e-37 | 42 | 339 | 10 | 318 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 5e-37 | 42 | 339 | 10 | 318 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
