| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra002143 |
| Family | CBM43 |
| Protein Properties | Length: 493 Molecular Weight: 54240.3 Isoelectric Point: 4.979 |
| Chromosome | Chromosome/Scaffold: 10 Start: 11290185 End: 11291787 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 373 | 458 | 1.2e-24 |
| WCMLNPNAISFSNSTNQLGDNVNYACTFSDCTALGYGSSCGNLDEVGNASYAFNMYFQVQNQKAEACDFEGLAMITTKNISRDQCN | |||
| GH17 | 32 | 350 | 0 |
| LGVNWGTMATHQLPPKTVVQMLKDNNVQKVKLFDADTNTMVALAGSGIEVMVAIPNDQLKAMGSYNRAKDWVRRNITRFNDDIKIKYVAVGNEPFLTSYN GSFINLTYPALFNIQKALNEAGVGDFIKATVPSNADVYSSPPENPVPSAGRFRQDIYEEMRLIVNFLAHNKAPFTVNIYPFLSLYLSSDFPFDYAFFNGQ NTVNDNGNGVVYTNVFDANFDTLLASLKELGHGDMTVIVGEVGWPTDGDKNANIPNAERFYAGLLPKLAANRGTPMRPGYIEVYLFGFIDEDAKSIAPGN FERHWGIFKYDGQPKFPAD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 493 Download |
| MSNHWKPSTT TVIFLCITIS SLSFFSSNVS ALGVNWGTMA THQLPPKTVV QMLKDNNVQK 60 VKLFDADTNT MVALAGSGIE VMVAIPNDQL KAMGSYNRAK DWVRRNITRF NDDIKIKYVA 120 VGNEPFLTSY NGSFINLTYP ALFNIQKALN EAGVGDFIKA TVPSNADVYS SPPENPVPSA 180 GRFRQDIYEE MRLIVNFLAH NKAPFTVNIY PFLSLYLSSD FPFDYAFFNG QNTVNDNGNG 240 VVYTNVFDAN FDTLLASLKE LGHGDMTVIV GEVGWPTDGD KNANIPNAER FYAGLLPKLA 300 ANRGTPMRPG YIEVYLFGFI DEDAKSIAPG NFERHWGIFK YDGQPKFPAD LSGEGEKKAL 360 TGAQNVQYLQ NQWCMLNPNA ISFSNSTNQL GDNVNYACTF SDCTALGYGS SCGNLDEVGN 420 ASYAFNMYFQ VQNQKAEACD FEGLAMITTK NISRDQCNFP IQIGDPTSGH CMYSGSSVRF 480 GLVSMLLLFM AL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 1.0e-5 | 224 | 342 | 123 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 9.0e-19 | 372 | 446 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-30 | 372 | 459 | 90 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-73 | 33 | 350 | 322 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_179534.1 | 0 | 29 | 463 | 18 | 448 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_187051.3 | 0 | 8 | 492 | 11 | 491 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_197323.1 | 0 | 1 | 492 | 1 | 488 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277003.1 | 0 | 24 | 463 | 17 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002525445.1 | 0 | 27 | 468 | 18 | 458 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 32 | 347 | 3 | 310 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
| PDB | 3ur8_A | 0 | 32 | 347 | 3 | 310 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
| PDB | 3ur7_B | 0 | 32 | 347 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 32 | 347 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 4gzj_A | 0 | 32 | 347 | 3 | 310 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
