| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra002149 |
| Family | CE8 |
| Protein Properties | Length: 494 Molecular Weight: 52872 Isoelectric Point: 7.3142 |
| Chromosome | Chromosome/Scaffold: 10 Start: 11255470 End: 11257707 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 273 | 482 | 0 |
| DVTVCKDGGKGCGYKTVQEAVDAAPGSNGDVKFVIGIREGVYEETVRVPFEKKNVVFIGDGMGKTVITGSLNVGQPGMTTYNSATVGVLGDGFMARDLTI ENTAGAEAHQAVAFRSDSDFSILENCELLGNQDTLYAHSLRQFYKQCRIQGNVDFIFGNSAAVFQDCNILIASKHSKLGGGGANNVITAHGRIDAAQSTG FVFLNCSFLV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 494 Download |
| MDSPKLPHSL STSSSTPLAS SAVKPHRKNL PPRAYILIII AVSAILLLLL TLILYANVSK 60 SSHNRHNTPQ QPPPPPTAQI RLACNATRFP DHCFSSLSKP GLVPQDPKPV QIIHSAISVS 120 YESLKSGQSQ IKSILDSSAG DKNRTNIATI CLEILSYSQH RTESSDVAVT SGGIKDARAW 180 MSAALAYQYD CWSGLKTVND TKQVVDTITF LDDLVKLTGT ALSMMVSFDN FGDDVVSWIH 240 PATERDGFWE KTGPSSGPVK EAGLSFPSGL KEDVTVCKDG GKGCGYKTVQ EAVDAAPGSN 300 GDVKFVIGIR EGVYEETVRV PFEKKNVVFI GDGMGKTVIT GSLNVGQPGM TTYNSATVGV 360 LGDGFMARDL TIENTAGAEA HQAVAFRSDS DFSILENCEL LGNQDTLYAH SLRQFYKQCR 420 IQGNVDFIFG NSAAVFQDCN ILIASKHSKL GGGGANNVIT AHGRIDAAQS TGFVFLNCSF 480 LVAHSICKFV GFR* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02468 | PLN02468 | 9.0e-71 | 80 | 481 | 425 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 9.0e-73 | 58 | 480 | 445 | + pectinesterase | ||
| PLN02301 | PLN02301 | 4.0e-80 | 124 | 478 | 367 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 1.0e-103 | 273 | 481 | 209 | + Pectinesterase. | ||
| PLN02708 | PLN02708 | 0 | 58 | 479 | 431 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM91523.1 | 0 | 181 | 479 | 1 | 301 | pectin methylesterase-like protein [Arabidopsis thaliana] |
| DDBJ | BAB09534.1 | 0 | 68 | 478 | 59 | 468 | pectin methylesterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_196538.1 | 0 | 68 | 478 | 33 | 442 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568991.2 | 0 | 1 | 479 | 1 | 494 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002281640.1 | 0 | 65 | 478 | 28 | 446 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 273 | 474 | 8 | 200 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 286 | 486 | 15 | 208 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 3e-17 | 273 | 478 | 5 | 225 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 3e-17 | 273 | 478 | 5 | 225 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 3e-17 | 273 | 478 | 5 | 225 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
