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Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra002178 |
Family | GH14 |
Protein Properties | Length: 538 Molecular Weight: 58586 Isoelectric Point: 6.5574 |
Chromosome | Chromosome/Scaffold: 10 Start: 11069397 End: 11071267 |
Description | beta-amylase 3 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 91 | 495 | 0 |
FVGLPLDTVSDCNNVNHLKAITAGLKALKLLGVEGIELPIFWGVVEKEAPGKYDWSGYLAVAEIVKKVGLKLHASLSFHGSKNPEISLPDWVAKIGEAEG GIYFTDRYGKQYKDCLSFAVDDVPVLAGKTPMEVYGDFCESFKSAFSDYMGNTITGITLGLGPDGELRYPSHQHETNISGAGEFQCYDKHMLSALKHYAE STGNPLWGLGGPHDAPAYDQQPHSTSFFSDGGSWESQYGDFFLTWYSSLLTSHADRVLSVASSAFKGTGVSLCGKLPLLHQWNKLRSQPSELTAGFYSSG GHDRYEAIAEIFAKNSCRMIIPGMDLSDEHQSPASLSSPESLLAHIKTSCKKQGVVVSGQNSSASVPGGFERIVENLKDESVGVDLFTYQRMGAVFFSPE HFHAF |
Full Sequence |
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Protein Sequence Length: 538 Download |
MEVSVIGNSQ TKKIYGTELT YRELGFRFGS QVISGESRNR VSFLTHQSSK WKEIKIQSSP 60 RSVRCEAIVS DQAPFLKPTP KSRSLDSVKL FVGLPLDTVS DCNNVNHLKA ITAGLKALKL 120 LGVEGIELPI FWGVVEKEAP GKYDWSGYLA VAEIVKKVGL KLHASLSFHG SKNPEISLPD 180 WVAKIGEAEG GIYFTDRYGK QYKDCLSFAV DDVPVLAGKT PMEVYGDFCE SFKSAFSDYM 240 GNTITGITLG LGPDGELRYP SHQHETNISG AGEFQCYDKH MLSALKHYAE STGNPLWGLG 300 GPHDAPAYDQ QPHSTSFFSD GGSWESQYGD FFLTWYSSLL TSHADRVLSV ASSAFKGTGV 360 SLCGKLPLLH QWNKLRSQPS ELTAGFYSSG GHDRYEAIAE IFAKNSCRMI IPGMDLSDEH 420 QSPASLSSPE SLLAHIKTSC KKQGVVVSGQ NSSASVPGGF ERIVENLKDE SVGVDLFTYQ 480 RMGAVFFSPE HFHAFTVFVR NMNQFELSSY DQAVDGDKAK TMSIGSGTTG AASLQTA* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02905 | PLN02905 | 1.0e-78 | 88 | 503 | 432 | + beta-amylase | ||
PLN02801 | PLN02801 | 6.0e-85 | 88 | 520 | 451 | + beta-amylase | ||
PLN02161 | PLN02161 | 2.0e-86 | 81 | 503 | 451 | + beta-amylase | ||
PLN00197 | PLN00197 | 2.0e-94 | 62 | 504 | 472 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 1.0e-110 | 78 | 504 | 438 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK85300.1 | 0 | 1 | 537 | 1 | 537 | AF402598_1 putative beta-amylase BMY3 [Arabidopsis thaliana] |
EMBL | CAN66037.1 | 0 | 1 | 537 | 1 | 541 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_197368.1 | 0 | 1 | 537 | 1 | 536 | BMY3; beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
RefSeq | XP_002276777.1 | 0 | 1 | 537 | 1 | 541 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002516865.1 | 0 | 1 | 537 | 1 | 545 | Beta-amylase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1b1y_A | 0 | 88 | 503 | 6 | 436 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
PDB | 1v3i_A | 0 | 85 | 503 | 9 | 442 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
PDB | 1q6g_A | 0 | 85 | 503 | 9 | 442 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 1q6d_A | 0 | 85 | 503 | 9 | 442 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
PDB | 1wdr_A | 0 | 85 | 503 | 9 | 442 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX130723 | 289 | 192 | 480 | 0 |
FY443880 | 293 | 56 | 347 | 0 |
FY448068 | 276 | 74 | 348 | 0 |
FY431251 | 277 | 262 | 538 | 0 |
ES902636 | 245 | 125 | 369 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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