| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra002257 |
| Family | CE8 |
| Protein Properties | Length: 383 Molecular Weight: 42342.7 Isoelectric Point: 9.4381 |
| Chromosome | Chromosome/Scaffold: 10 Start: 10629213 End: 10631936 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 87 | 376 | 0 |
| HKKHNKGDFTKIQDAIDSLPLINLVRVVIKVHAGVYKEKVNIPPMKAFITIEGEGADKTIVQWGDTAQTHDPKGNPMGTFNSASFAVNSPFFVAKNITFK NTTPVPLPGAVGKQAVALRVSADNAAFFGCKMLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLGAVTAQGRSSVLEDTGFSFV KCKVTGTGVLYLGRAWGPFSRVVFAYTYMDNIILPKGWYNWGDPSREMTVFYGQYKCTGAGANYAGRVAWARELTDEEAKPFISLTFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 383 Download |
| MPQFSSSQAP ILILPVLIIL LCSTQTQCHT KGLRLRPRNQ KIVNSTSQTQ NPEEEFLKWV 60 RYVGSLKHTV FKAAKNKLFA SYTLTVHKKH NKGDFTKIQD AIDSLPLINL VRVVIKVHAG 120 VYKEKVNIPP MKAFITIEGE GADKTIVQWG DTAQTHDPKG NPMGTFNSAS FAVNSPFFVA 180 KNITFKNTTP VPLPGAVGKQ AVALRVSADN AAFFGCKMLG AQDTLYDHLG RHYYKDCYIE 240 GSVDFIFGNA LSLYEGCHVH AIADKLGAVT AQGRSSVLED TGFSFVKCKV TGTGVLYLGR 300 AWGPFSRVVF AYTYMDNIIL PKGWYNWGDP SREMTVFYGQ YKCTGAGANY AGRVAWAREL 360 TDEEAKPFIS LTFIDGSEWI RL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02634 | PLN02634 | 3.0e-117 | 44 | 380 | 338 | + probable pectinesterase | ||
| PLN02304 | PLN02304 | 6.0e-119 | 94 | 381 | 296 | + probable pectinesterase | ||
| PLN02432 | PLN02432 | 9.0e-120 | 92 | 381 | 290 | + putative pectinesterase | ||
| PLN02665 | PLN02665 | 4.0e-123 | 93 | 380 | 290 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 0 | 43 | 382 | 340 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN63186.1 | 0 | 14 | 382 | 10 | 379 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI27989.1 | 0 | 70 | 382 | 1 | 313 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_197474.1 | 0 | 1 | 382 | 1 | 383 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002330522.1 | 0 | 11 | 382 | 9 | 381 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002514210.1 | 0 | 5 | 382 | 2 | 383 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 93 | 381 | 17 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 5.60519e-45 | 86 | 381 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 1e-24 | 80 | 375 | 29 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 9e-19 | 81 | 368 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 9e-19 | 81 | 368 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
