| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra002442 |
| Family | GT47 |
| Protein Properties | Length: 468 Molecular Weight: 53184 Isoelectric Point: 10.123 |
| Chromosome | Chromosome/Scaffold: 10 Start: 9555538 End: 9557168 |
| Description | FRA8 homolog |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT47 | 111 | 411 | 0 |
| GMKIYVYDLPARFNVDWVTASDRCASHLFAAEVAIHRALLSDSSVRTSDPEEADFFFVPVYVSCNFSTANGFPSLSHARSLISSAVDFLSDSYPFWNRTR GFDHVFVASHDFGACFHAMEDMAIEEGIPEFMKNSIILQTFGVNYKHPCQEAEHVVIPPYIPPESVQRAIDRAPANGRRDIWAFFRGKMEVNPKNISGRF YSKGVRTAILKKYGGRRRFYLNRHRFAGYRSEIVRSVFCLCPLGWAPWSPRLVESAVLGCVPVVIADGIKLPFSETVRWSEISLTVAEKDVKNLRKILER V | |||
| Full Sequence |
|---|
| Protein Sequence Length: 468 Download |
| MSLDIKRPSI NKTKKKTGFI VKMQLNNNNN NRGGHNKTNL FFIFFRNYYR WVIWLFLSLY 60 FFTSYFAGDQ SSPSTTTTTS LLSNHQTSSS LPSRALIESS AILKPGGPFS GMKIYVYDLP 120 ARFNVDWVTA SDRCASHLFA AEVAIHRALL SDSSVRTSDP EEADFFFVPV YVSCNFSTAN 180 GFPSLSHARS LISSAVDFLS DSYPFWNRTR GFDHVFVASH DFGACFHAME DMAIEEGIPE 240 FMKNSIILQT FGVNYKHPCQ EAEHVVIPPY IPPESVQRAI DRAPANGRRD IWAFFRGKME 300 VNPKNISGRF YSKGVRTAIL KKYGGRRRFY LNRHRFAGYR SEIVRSVFCL CPLGWAPWSP 360 RLVESAVLGC VPVVIADGIK LPFSETVRWS EISLTVAEKD VKNLRKILER VAATNLSVIQ 420 RNLREPAFKR ALLYNVPMME GDATWHILEA LRRKLDRSYR RSSVLSQ* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 1.0e-75 | 110 | 411 | 309 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABI64067.1 | 0 | 37 | 460 | 16 | 435 | glycosyltransferase GT47C [Populus tremula x Populus alba] |
| DDBJ | BAB10615.1 | 0 | 1 | 467 | 1 | 493 | unnamed protein product [Arabidopsis thaliana] |
| RefSeq | NP_197685.2 | 0 | 1 | 467 | 1 | 464 | F8H (FRA8 HOMOLOG); catalytic [Arabidopsis thaliana] |
| RefSeq | XP_002275679.1 | 0 | 3 | 456 | 2 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314302.1 | 0 | 1 | 460 | 1 | 455 | predicted protein [Populus trichocarpa] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
