| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra002646 |
| Family | CBM43 |
| Protein Properties | Length: 479 Molecular Weight: 52428.6 Isoelectric Point: 8.9043 |
| Chromosome | Chromosome/Scaffold: 10 Start: 8405927 End: 8407478 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 368 | 447 | 2.5e-22 |
| WCVVNNNKDLSNASAKALEACSVSDCTSILPGGSCSGIGWPRNVSYAFNSLYQQSDHKAESCDFGGLGLITTVDPSEDKC | |||
| GH17 | 29 | 348 | 0 |
| IGVNWGTEALHPLPPSKVVELLKSNGIAKVKLFDADPKVLRALSGSNIGVTVGIPNSMVKSLNASRKVAESWVHDNVTRYFDGGNRVRIEYVAVGDEPFL QSYGNQYRPFVIGAAMNIQNALAKASLASEVKVVVPSSFDSFLSESGRASSGHFRADLNKTMIELLSFLTRHHSPFFVTISPFISFRQNKNISLDFSLFK ETAKAHKDGRKAYRNSFDLSYNTLVTALSSIGFPDVDIVVSRIGWPTDGAANATSPTAEAFLKGLMGHLEKKTGSSPRFPVETYIESLLDEDKRNVSSGN FERHWGVFTFDGQAKYSFSF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 479 Download |
| MTRRLYLLLP LLLAVTAEIS LTKFSAGAIG VNWGTEALHP LPPSKVVELL KSNGIAKVKL 60 FDADPKVLRA LSGSNIGVTV GIPNSMVKSL NASRKVAESW VHDNVTRYFD GGNRVRIEYV 120 AVGDEPFLQS YGNQYRPFVI GAAMNIQNAL AKASLASEVK VVVPSSFDSF LSESGRASSG 180 HFRADLNKTM IELLSFLTRH HSPFFVTISP FISFRQNKNI SLDFSLFKET AKAHKDGRKA 240 YRNSFDLSYN TLVTALSSIG FPDVDIVVSR IGWPTDGAAN ATSPTAEAFL KGLMGHLEKK 300 TGSSPRFPVE TYIESLLDED KRNVSSGNFE RHWGVFTFDG QAKYSFSFNH NAKKLVNAQN 360 VQYLPPKWCV VNNNKDLSNA SAKALEACSV SDCTSILPGG SCSGIGWPRN VSYAFNSLYQ 420 QSDHKAESCD FGGLGLITTV DPSEDKCRFW IQLDTSHSSP HIPIFFLSSS LLLLFLLS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 6.0e-13 | 367 | 435 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-27 | 367 | 449 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 7.0e-69 | 29 | 348 | 321 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF95444.1 | 0 | 29 | 475 | 35 | 482 | Glycosyl hydrolases family 17 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| EMBL | CBI28434.1 | 0 | 26 | 472 | 20 | 472 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_200656.2 | 0 | 14 | 468 | 11 | 463 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002269108.1 | 0 | 17 | 472 | 14 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002313970.1 | 0 | 22 | 458 | 15 | 455 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 29 | 348 | 2 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 3f55_C | 0 | 29 | 348 | 2 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 3f55_B | 0 | 29 | 348 | 2 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 3f55_A | 0 | 29 | 348 | 2 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 3em5_D | 0 | 29 | 348 | 2 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
