| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra002805 |
| Family | CBM43 |
| Protein Properties | Length: 493 Molecular Weight: 53698.3 Isoelectric Point: 7.3058 |
| Chromosome | Chromosome/Scaffold: 10 Start: 7480844 End: 7482565 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 355 | 437 | 4.9e-30 |
| WCIASSKASEIELRGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNGGTDVACSFGGVGVKVNKDPSYDKC | |||
| GH17 | 12 | 332 | 0 |
| VGVCYGRSADDLPTPAKVVQLIKQHNIKYVRIYDSNSQVLKAFANTTIELMIGVPNSDLKPFSQFQSNADTWLKNSVLPYYPTTKITYITVGAESTDDPH TNASSLVVPAMQNVLTALKKVGLSRRIKVSTTLSLGVLSRSFPPSAGAFNSSYAYFLRPMLEFLAENQSPFMVDLYPYYAYRDSPNNVSLDYVLFESSSE VIDPNTGLLYKNMFDAQVDALYYALTALNFRTIKIMVTETGWPTKGSPKEKGAASPDNAETYNSNIVRHTVTNQGTPSKPGEAMDVYIFSLFNENRKTGL DSERNWGLFYPDQTSVYQLDF | |||
| Full Sequence |
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| Protein Sequence Length: 493 Download |
| MHNCNGCYGG KVGVCYGRSA DDLPTPAKVV QLIKQHNIKY VRIYDSNSQV LKAFANTTIE 60 LMIGVPNSDL KPFSQFQSNA DTWLKNSVLP YYPTTKITYI TVGAESTDDP HTNASSLVVP 120 AMQNVLTALK KVGLSRRIKV STTLSLGVLS RSFPPSAGAF NSSYAYFLRP MLEFLAENQS 180 PFMVDLYPYY AYRDSPNNVS LDYVLFESSS EVIDPNTGLL YKNMFDAQVD ALYYALTALN 240 FRTIKIMVTE TGWPTKGSPK EKGAASPDNA ETYNSNIVRH TVTNQGTPSK PGEAMDVYIF 300 SLFNENRKTG LDSERNWGLF YPDQTSVYQL DFTGKNGGFR SNSSGGNSRG RSESWCIASS 360 KASEIELRGA LDWACGPGNV DCTAIQPSQP CFQPDTLVSH ASFVFNSYFQ QNGGTDVACS 420 FGGVGVKVNK DPSYDKCVYI TAGGNNTKAT NASALNSSAS TSRGNESLVW NLSLCLVILL 480 LFSLQTTNSQ AL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 3.0e-7 | 242 | 323 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-18 | 355 | 426 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 4.0e-36 | 355 | 439 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-100 | 18 | 332 | 315 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD91576.1 | 0 | 7 | 451 | 22 | 466 | beta-1,3-glucanase [Medicago sativa] |
| RefSeq | NP_200470.1 | 0 | 7 | 492 | 21 | 506 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002283473.1 | 0 | 7 | 482 | 21 | 493 | PREDICTED: similar to beta-1,3-glucanase [Vitis vinifera] |
| RefSeq | XP_002330523.1 | 0 | 7 | 443 | 22 | 455 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002514201.1 | 0 | 7 | 455 | 21 | 467 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 12 | 332 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 11 | 333 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 11 | 333 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_B | 0 | 11 | 333 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_A | 0 | 11 | 333 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FG558248 | 232 | 102 | 333 | 0 |
| DR946401 | 293 | 116 | 408 | 0 |
| DT738192 | 280 | 113 | 392 | 0 |
| EX100858 | 270 | 224 | 493 | 0 |
| FD533232 | 233 | 77 | 308 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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