| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra002891 |
| Family | CE8 |
| Protein Properties | Length: 410 Molecular Weight: 46316.1 Isoelectric Point: 5.7888 |
| Chromosome | Chromosome/Scaffold: 10 Start: 6947473 End: 6949179 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 83 | 186 | 5.1e-26 |
| IVVDKRGRGDSVTVQGAVDMVPDSNSQRVKILILPGVYREKVIVPRTKPYISFIGNESYAEYTVITWSDKSSDPYSNGTELGTYRTATVAIDSDFFCATA ITFE | |||
| CE8 | 216 | 401 | 0 |
| TVVAEAGEEGKQAVALRVTGDKAMFYKVRVLGSQDTLNDATGSHYFFQCHIQGSVDFIFGNAKSLYQDCDIRSTARRFGAIAAHHRSEESDDTGFSFVNC DIGGTGKVYLGRAWGNYSTTVYSNCYIADIITPVGWSDWDDTDRQSKVLFGEYNCRGRGAERRGRVPWSRSLTQDEVKPFLGREFI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 410 Download |
| MKDKAFVPAV LLFCFWVLLS SGSSRLLQSD DKGNELKNYI SWEDMRVVEE VGRERRSSSV 60 KVKDNNMVNQ ESNMATVNAS RVIVVDKRGR GDSVTVQGAV DMVPDSNSQR VKILILPGVY 120 REKVIVPRTK PYISFIGNES YAEYTVITWS DKSSDPYSNG TELGTYRTAT VAIDSDFFCA 180 TAITFEVLKP FYLVFFFYMH FEFMFFNVMD NELQNTVVAE AGEEGKQAVA LRVTGDKAMF 240 YKVRVLGSQD TLNDATGSHY FFQCHIQGSV DFIFGNAKSL YQDCDIRSTA RRFGAIAAHH 300 RSEESDDTGF SFVNCDIGGT GKVYLGRAWG NYSTTVYSNC YIADIITPVG WSDWDDTDRQ 360 SKVLFGEYNC RGRGAERRGR VPWSRSLTQD EVKPFLGREF IFGDQWLRL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 2.0e-88 | 77 | 408 | 342 | + probable pectinesterase | ||
| PLN02432 | PLN02432 | 3.0e-96 | 75 | 408 | 336 | + putative pectinesterase | ||
| PLN02634 | PLN02634 | 9.0e-102 | 81 | 407 | 329 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 9.0e-118 | 80 | 409 | 331 | + pectinesterase family protein | ||
| PLN02671 | PLN02671 | 0 | 1 | 409 | 409 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEE67559.1 | 0 | 38 | 409 | 32 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
| RefSeq | NP_200370.1 | 0 | 1 | 409 | 1 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002264297.1 | 0 | 1 | 409 | 1 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002298857.1 | 0 | 78 | 409 | 15 | 318 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522727.1 | 0 | 7 | 409 | 31 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 5.60519e-45 | 83 | 408 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-33 | 84 | 408 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 0.0000000000001 | 74 | 404 | 23 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1qjv_B | 0.0000000000007 | 95 | 344 | 20 | 258 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.0000000000007 | 95 | 344 | 20 | 258 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
