y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra002927 |
Family | CBM43 |
Protein Properties | Length: 464 Molecular Weight: 49793.1 Isoelectric Point: 5.4863 |
Chromosome | Chromosome/Scaffold: 10 Start: 6696410 End: 6697896 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 374 | 453 | 3e-32 |
WCVANGKTTKEKLQEGLDYACGEGGADCRPIQKGATCYDPESLEAHASYAFNSYYQKNARGVGTCDFGGAAYVVSQPPST | |||
GH17 | 27 | 346 | 0 |
IGVNYGRIANNLPAPEKVVELLKSQGINRVKLYDTDKSVLTALANSGIKVVVSLPNENLAAASADQSYTDNWVQENVKKYTPATDIEAIAVGNEVFVDPR NTTTYLVQAMKNVQSSLVKFNLDESIKVSSPIALSALANSYQPSSGSFKPDLIEPVIKPMLDLLRKTSSHIMVNAYPFFAYAANADKISLDYALFKENAG NVDSGNGLKYNNLLDAQIDAVFAAMAAVGFNDVKLVVTETGWPSAGDENEIGAGSANAAAYNGGLVKRVLTGNGTPLKPKEPLNVYLFALFNENQKTGPT SERNYGLFYPNENKVYDVPF |
Full Sequence |
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Protein Sequence Length: 464 Download |
MALFVLSLLM LSSFSAISFT HADSGMIGVN YGRIANNLPA PEKVVELLKS QGINRVKLYD 60 TDKSVLTALA NSGIKVVVSL PNENLAAASA DQSYTDNWVQ ENVKKYTPAT DIEAIAVGNE 120 VFVDPRNTTT YLVQAMKNVQ SSLVKFNLDE SIKVSSPIAL SALANSYQPS SGSFKPDLIE 180 PVIKPMLDLL RKTSSHIMVN AYPFFAYAAN ADKISLDYAL FKENAGNVDS GNGLKYNNLL 240 DAQIDAVFAA MAAVGFNDVK LVVTETGWPS AGDENEIGAG SANAAAYNGG LVKRVLTGNG 300 TPLKPKEPLN VYLFALFNEN QKTGPTSERN YGLFYPNENK VYDVPFSAKS TPVNDGKDKV 360 PVKTPSSHVG GQTWCVANGK TTKEKLQEGL DYACGEGGAD CRPIQKGATC YDPESLEAHA 420 SYAFNSYYQK NARGVGTCDF GGAAYVVSQP PSTYSILFSY HFN* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.005 | 46 | 337 | 301 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-24 | 373 | 445 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 7.0e-37 | 373 | 458 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 3.0e-89 | 27 | 346 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL77689.1 | 0 | 1 | 451 | 1 | 449 | AT5g55180/MCO15_13 [Arabidopsis thaliana] |
GenBank | AAM66024.1 | 0 | 1 | 451 | 1 | 449 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
DDBJ | BAB08587.1 | 0 | 1 | 457 | 1 | 455 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
RefSeq | NP_001154780.1 | 0 | 1 | 452 | 1 | 450 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_568822.1 | 0 | 1 | 451 | 1 | 449 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 27 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 27 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 2cyg_A | 0 | 27 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 27 | 347 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 27 | 347 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |