y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra002963 |
Family | GT8 |
Protein Properties | Length: 536 Molecular Weight: 60959.4 Isoelectric Point: 9.0341 |
Chromosome | Chromosome/Scaffold: 10 Start: 6415174 End: 6417833 |
Description | galacturonosyltransferase 12 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 175 | 507 | 0 |
CLALKLAHEHSINAAARLQLPEAELVPTLVDNNYFHFVLASDNILAASVVAKSLVQNSLRPHKIVLHIITDRKTYFPMQAWFSLHPLSPAIIEVKALHHF DWLSKGKLPVLDAMEKDQRVRSQFRGGSSVIVANNEENPVVVAAKLQALSPKYNSLMNHIRIHLPELFPSLNKVVFLDDDIVIQTDLSPLWDIDMDGKVN GAVETCRGEDKFVMSKKFKSYLNFSNPLIARHFDPEECAWAYGMNVFDLAAWRKTNISSTYYHWLDENLKSDLSLWQLGTLPPGLIAFHGHVQTIDPFWH MLGLGYQETTSFSDAESAAVVHFNGRAKPWLDI |
Full Sequence |
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Protein Sequence Length: 536 Download |
MQLHISPSLR HVTVVTGKGL REFIKVKVGS RRFSYQMMFY SLLFFTFLLR FVFVLSTVDT 60 IDGDPSPCSS LACLGKRLKP KLLGRRAETG NVPEAMYQVL EQPLSEQELK GRSDIPQTLQ 120 DFMSEVKRSK SDAREFAQKL KEMVTLMEQR TRTAKIQEYL YRHVASSSIP KQLHCLALKL 180 AHEHSINAAA RLQLPEAELV PTLVDNNYFH FVLASDNILA ASVVAKSLVQ NSLRPHKIVL 240 HIITDRKTYF PMQAWFSLHP LSPAIIEVKA LHHFDWLSKG KLPVLDAMEK DQRVRSQFRG 300 GSSVIVANNE ENPVVVAAKL QALSPKYNSL MNHIRIHLPE LFPSLNKVVF LDDDIVIQTD 360 LSPLWDIDMD GKVNGAVETC RGEDKFVMSK KFKSYLNFSN PLIARHFDPE ECAWAYGMNV 420 FDLAAWRKTN ISSTYYHWLD ENLKSDLSLW QLGTLPPGLI AFHGHVQTID PFWHMLGLGY 480 QETTSFSDAE SAAVVHFNGR AKPWLDIAFP HLRPLWAKYL DSSDRFIKSC HIRAS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02829 | PLN02829 | 5.0e-124 | 113 | 532 | 427 | + Probable galacturonosyltransferase | ||
PLN02742 | PLN02742 | 1.0e-128 | 139 | 533 | 395 | + Probable galacturonosyltransferase | ||
PLN02867 | PLN02867 | 9.0e-156 | 105 | 532 | 431 | + Probable galacturonosyltransferase | ||
PLN02659 | PLN02659 | 0 | 1 | 535 | 535 | + Probable galacturonosyltransferase | ||
PLN02870 | PLN02870 | 0 | 1 | 535 | 535 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABP65660.1 | 0 | 1 | 535 | 1 | 533 | secondary wall-associated glycosyltransferase family 8D [Populus tremula x Populus alba] |
EMBL | CBI20502.1 | 0 | 1 | 535 | 1 | 533 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_200280.1 | 0 | 1 | 535 | 1 | 535 | GAUT12 (GALACTURONOSYLTRANSFERASE 12); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002282637.1 | 0 | 1 | 535 | 1 | 534 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319802.1 | 0 | 1 | 535 | 1 | 533 | glycosyltransferase, CAZy family GT8 [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ss9_A | 0.00008 | 323 | 504 | 74 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1ga8_A | 0.0001 | 323 | 504 | 74 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1g9r_A | 0.0001 | 323 | 504 | 74 | 252 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |