| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003062 |
| Family | CE8 |
| Protein Properties | Length: 457 Molecular Weight: 49812.3 Isoelectric Point: 6.5844 |
| Chromosome | Chromosome/Scaffold: 10 Start: 5540204 End: 5541659 |
| Description | pectin methylesterase PCR fragment F |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 142 | 438 | 0 |
| DITVSKDGSGTFKTIAEAIKKAPEHSSRRFVIYVKAGKYEEEILKVGRKKTNLMFIGDGKGKTVITGGKSIADDLTTFHTATFAATGAGFIVRDITFENY AGPAKHQAVALRVGGDHAVVYRCSIIGYQDALYVHSNRQFFRECEIYGTVDFIFGNAAVILQSCNIYARKPMPQQKITITAQNRKDPNQNTGIPIHACKL LATADLEASKGSYPTYLGRPWKLYSRVVYMMSDMGDHINPRGWLEWNGPFALDSLYYGEYMNRGPGSSTGQRVKWPGYHIITSPVEASKFTVGQFIG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 457 Download |
| MPPRVRSAYD SCLELLDDSV DALSRALSSI VAASSSDDSH SDVMTWLSSA MTNHDTCTEG 60 FDEAGDAGGG VKDQVIGAVK DLSEMVINCL AIFSGNVNDL SGVPVVNHRK LLGEEETEEF 120 PYWLKRGDRE LLGTPATEIQ ADITVSKDGS GTFKTIAEAI KKAPEHSSRR FVIYVKAGKY 180 EEEILKVGRK KTNLMFIGDG KGKTVITGGK SIADDLTTFH TATFAATGAG FIVRDITFEN 240 YAGPAKHQAV ALRVGGDHAV VYRCSIIGYQ DALYVHSNRQ FFRECEIYGT VDFIFGNAAV 300 ILQSCNIYAR KPMPQQKITI TAQNRKDPNQ NTGIPIHACK LLATADLEAS KGSYPTYLGR 360 PWKLYSRVVY MMSDMGDHIN PRGWLEWNGP FALDSLYYGE YMNRGPGSST GQRVKWPGYH 420 IITSPVEASK FTVGQFIGGS SWLPSTGVAF FSGLSQ* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02506 | PLN02506 | 5.0e-156 | 4 | 455 | 455 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 1.0e-156 | 4 | 454 | 455 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 3.0e-168 | 3 | 454 | 452 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 0 | 1 | 456 | 457 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 142 | 440 | 299 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF42038.1 | 0 | 1 | 455 | 147 | 616 | pectin methylesterase 1 [Pyrus communis] |
| RefSeq | NP_200149.1 | 0 | 1 | 456 | 133 | 587 | PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F); pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002278061.1 | 0 | 1 | 455 | 134 | 596 | PREDICTED: similar to pectin methylesterase 1 [Vitis vinifera] |
| RefSeq | XP_002317777.1 | 0 | 1 | 454 | 95 | 550 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002321999.1 | 0 | 1 | 455 | 145 | 604 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 136 | 454 | 2 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 139 | 454 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 2e-22 | 136 | 445 | 1 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 2e-22 | 136 | 445 | 1 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 2e-22 | 136 | 445 | 1 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FY445930 | 262 | 88 | 349 | 0 |
| FG568037 | 239 | 208 | 446 | 0 |
| ES831205 | 283 | 172 | 454 | 0 |
| FY423696 | 217 | 241 | 457 | 0 |
| DK534873 | 220 | 238 | 457 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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