| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003128 |
| Family | GH35 |
| Protein Properties | Length: 708 Molecular Weight: 79493.4 Isoelectric Point: 6.7221 |
| Chromosome | Chromosome/Scaffold: 07 Start: 11486652 End: 11491038 |
| Description | beta-galactosidase 15 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 43 | 199 | 0 |
| RKEGGLDAIETYVFWNADEPTRRQYDFSGKLDLIRFLKTIQDEGLYGVLRIGPYACAEWNYGGFPVWLRNMPGMVFRTTNKAFMDEMQNFTTMIVDMVKK ENLFASQGGPIILAQIENEYGNVMGPYGESGKEYIKWCANMAQSLDVGVPWIMCQRN | |||
| Full Sequence |
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| Protein Sequence Length: 708 Download |
| MPQSFLMMAE PLPLMAIAEF SFLVQSIILE ALLRYLIYLT SNRKEGGLDA IETYVFWNAD 60 EPTRRQYDFS GKLDLIRFLK TIQDEGLYGV LRIGPYACAE WNYGGFPVWL RNMPGMVFRT 120 TNKAFMDEMQ NFTTMIVDMV KKENLFASQG GPIILAQIEN EYGNVMGPYG ESGKEYIKWC 180 ANMAQSLDVG VPWIMCQRND APRPMYHGGT NFNRTAGGPY ITTSYDYDAP LDEYGNLNQP 240 KYGHLKQLHD VLHSMERALT YGNISTIDFG NYASATIYKT EEGSSCFFGN GNENSDATIS 300 FQGESYVVPA WSVTILPDCK NEAYNTAKIT TQTSMMVKKS NEAENIPSTL KWSWRPENMD 360 NFLLKGKGES TQTQLFDQKV VTNDQSDYLW YMTTVKFKKR DLFLGKSMSL RINSTAHVLH 420 VFVNGKHIGN QHAENGKFNY VFEKDVKFKS GRNVIALLSI TVGLANYGAF FENKPAGITG 480 PIFITGINGD ETIVKDLSAH KWSYKTGLNR FENQLFRTES MFKWSVESVP FNRTMTWYKA 540 TFKSPFGNDP VVVDLMGLGK GAYHAEKCLT NCGEPTQRWY HVPRSFLNAE GDNTLVLFEE 600 MGGNPSLVNF QTTRVGSVCA NVYEKTIIEL SCDRKSIFVI KFASFGNPYG NCGSFEKGSC 660 ESSNNAVDIL TQKCIGKEKC SIEISKEKFG APDCGGAPRR LAVEAIC* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02140 | Gal_Lectin | 3.0e-9 | 630 | 707 | 81 | + Galactose binding lectin domain. | ||
| COG1874 | LacA | 6.0e-11 | 44 | 164 | 132 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam01301 | Glyco_hydro_35 | 2.0e-18 | 205 | 249 | 48 | + Glycosyl hydrolases family 35. | ||
| pfam01301 | Glyco_hydro_35 | 8.0e-75 | 44 | 262 | 237 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 39 | 707 | 788 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAJ09953.1 | 0 | 39 | 707 | 59 | 827 | beta-galactosidase [Mangifera indica] |
| EMBL | CBI27773.1 | 0 | 39 | 707 | 74 | 835 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002276918.1 | 0 | 39 | 707 | 5 | 766 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002297749.1 | 0 | 13 | 707 | 18 | 823 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516237.1 | 0 | 39 | 707 | 59 | 825 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 6e-22 | 47 | 199 | 50 | 196 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 5e-21 | 44 | 164 | 50 | 168 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 5e-21 | 44 | 164 | 50 | 168 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES271655 | 183 | 208 | 390 | 0 |
| GR457807 | 174 | 39 | 212 | 0 |
| FR615187 | 191 | 205 | 395 | 0 |
| GR450455 | 266 | 300 | 560 | 0 |
| GR457807 | 34 | 1 | 34 | 0.0000003 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Brassica rapa | Bra003353 | Bra021198 | |||
| Linum usitatissimum | Lus10011237 | Lus10036109 | Lus10000271 | ||
| Malus domestica | MDP0000127542.34.225 | MDP0000127542.34.225 | |||
| Panicum virgatum | Pavirv00000761m | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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