| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003200 |
| Family | PL1 |
| Protein Properties | Length: 492 Molecular Weight: 52810.2 Isoelectric Point: 6.8539 |
| Chromosome | Chromosome/Scaffold: 07 Start: 11826331 End: 11830328 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 132 | 339 | 0 |
| VIQEEPLWIVFSSNMFIRLKQELIINSYKTIDGRGAAVHVTGNGCLTIQYVQHVIIHNIHIYDCKPSGGAVVAASPTKVGRRGRSDGDGISIFGSQKIWV DHCSLSHCTDGLIDVVLGSTAITISNNYFTHHDEVMLLGHDDKYVLDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTSWKMYAIGGSGNPTINS QGNRYSAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 492 Download |
| MHPPHFSISI LLLCLFFFTL LEATKPLNLT LPHQHPSPDS VALHVTSTIN ASLSRRQLTS 60 SSSSTCGTGN PIDDCWRCDS SDWSSNRQRL ADCSIGFGSG TLGGKNGRIY VVTDSSDNNP 120 ANPTPGTLRH AVIQEEPLWI VFSSNMFIRL KQELIINSYK TIDGRGAAVH VTGNGCLTIQ 180 YVQHVIIHNI HIYDCKPSGG AVVAASPTKV GRRGRSDGDG ISIFGSQKIW VDHCSLSHCT 240 DGLIDVVLGS TAITISNNYF THHDEVMLLG HDDKYVLDTG MQVTIAFNHF GQGLVQRMPR 300 CRRGYIHVVN NDFTSWKMYA IGGSGNPTIN SQGNRYSAPS DPSAKEVTKR VDSTDDGEWA 360 NWNWRTEGDL MENGAFFVAS GEGVSTLYSK ASSVEPKAAA LVDQLTQNAG VFGGPRDDQG 420 QSGDSYSGYG GGGAGGTGAI GGTSRGSSSN SDNNFFGMIF GNNAPPRPRL TLLLLSLLMI 480 CVLSTSTLLL W* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 8.0e-24 | 100 | 334 | 246 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-58 | 151 | 336 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-70 | 145 | 340 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ87025.1 | 0 | 1 | 490 | 1 | 499 | pectate lyase-like protein [Brassica napus] |
| EMBL | CAB41092.1 | 0 | 23 | 485 | 22 | 496 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191052.2 | 0 | 23 | 480 | 22 | 491 | PMR6 (powdery mildew resistant 6); lyase/ pectate lyase [Arabidopsis thaliana] |
| RefSeq | XP_002316399.1 | 0 | 7 | 416 | 5 | 415 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002534016.1 | 0 | 4 | 468 | 5 | 464 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 70 | 411 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 70 | 411 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-20 | 90 | 336 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000003 | 154 | 313 | 128 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3krg_A | 0.000000000002 | 145 | 348 | 116 | 337 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
