y
Basic Information | |
---|---|
Species | Brassica rapa |
Cazyme ID | Bra003212 |
Family | CBM43 |
Protein Properties | Length: 450 Molecular Weight: 48558.8 Isoelectric Point: 10.1324 |
Chromosome | Chromosome/Scaffold: 07 Start: 11909913 End: 11911801 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 365 | 448 | 9.7e-34 |
WCVAKSGATNAQLQANIDWVCSQGGVDCKPIQAGGSCFNPSSLRMHASFVMNAYFQKNGRSDGSCHFSGTGVVVRSNPSDGACK | |||
GH17 | 28 | 340 | 0 |
IGVNYGTLGNLPPPTQVANFLKTQASIDSVKIFNVDPNILRAFAGTGISVVVTVPNGDIPALANGMQARRWVSANILPFHPQTKIKYISVGNEILLTGDN NTISKLLPAMRTINSALVRAGVRDVKVTTAHSLNIIAYDLHGAPSRGRFRPVWEKNILAPILAFHRQTKSPFMVNPYPYFGFDPKNVNFAIFRSPYKAVR DPFTRKIYTNMYDALMDSTYSAMKALGYGDVNIVVGETGWPSACDAPWCSPANAAWFNLNIIRRAQGQGTPLMPKRRFETYIFGLFNEESKPGPTAERNW GLFRSDFSPVYDV |
Full Sequence |
---|
Protein Sequence Length: 450 Download |
MATAPPLISF LLISAAVLLT FPAAISSIGV NYGTLGNLPP PTQVANFLKT QASIDSVKIF 60 NVDPNILRAF AGTGISVVVT VPNGDIPALA NGMQARRWVS ANILPFHPQT KIKYISVGNE 120 ILLTGDNNTI SKLLPAMRTI NSALVRAGVR DVKVTTAHSL NIIAYDLHGA PSRGRFRPVW 180 EKNILAPILA FHRQTKSPFM VNPYPYFGFD PKNVNFAIFR SPYKAVRDPF TRKIYTNMYD 240 ALMDSTYSAM KALGYGDVNI VVGETGWPSA CDAPWCSPAN AAWFNLNIIR RAQGQGTPLM 300 PKRRFETYIF GLFNEESKPG PTAERNWGLF RSDFSPVYDV GLLRGGGRGR PAPALPAPST 360 AGGKWCVAKS GATNAQLQAN IDWVCSQGGV DCKPIQAGGS CFNPSSLRMH ASFVMNAYFQ 420 KNGRSDGSCH FSGTGVVVRS NPSDGACKF* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-6 | 24 | 333 | 324 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-25 | 364 | 436 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-40 | 364 | 449 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-83 | 28 | 340 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK76666.1 | 0 | 31 | 449 | 32 | 449 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
GenBank | AAM66982.1 | 0 | 31 | 449 | 32 | 449 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
RefSeq | NP_191103.1 | 0 | 31 | 449 | 32 | 449 | glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] |
RefSeq | XP_002312098.1 | 0 | 27 | 449 | 29 | 453 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530863.1 | 0 | 11 | 449 | 10 | 456 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 27 | 330 | 1 | 303 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3f55_C | 0 | 27 | 330 | 1 | 303 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3f55_B | 0 | 27 | 330 | 1 | 303 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3f55_A | 0 | 27 | 330 | 1 | 303 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3em5_D | 0 | 27 | 330 | 1 | 303 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |