| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003286 |
| Family | GH28 |
| Protein Properties | Length: 434 Molecular Weight: 46670.6 Isoelectric Point: 8.0866 |
| Chromosome | Chromosome/Scaffold: 07 Start: 12383182 End: 12385503 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 93 | 421 | 0 |
| KKACSTNGVTTFLIPKGKTYLLKSIRFRGPCKSLRSFQILGTLSASTKRSDYSNDKNHWLILEDVNNLSIDGGSAGIVDGNGKIWWQNSCKIDKSKPCTK APTALTLYNLNNLNVKNLRVRNAQQIQISIEKCNSVDVKNVKITAPGDSPNTDGIHIVATKNIRISNSDIGTGDDCISIEDGSQNVQINDLTCGPGHGIS IGSLGDDNSKAYVSGINVDGATLSETDNGVRIKTYQGGSGTAKNIKFQNIRMDNVKNPIIIDQNYCDKDKCEQQESAVQVNNVVYRNIQGTSATDVAIMF NCSVKYPCQGIVLENVNIKGGKASCKNVN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 434 Download |
| MARCHGSLAI FLCVLLMLAC CQALSSNVDD GYGHEDGSFE TDSLIKLNND DDVLTLKSSD 60 RPTTESSTVS VSNFGAKGDG KTDDTQAFKK AWKKACSTNG VTTFLIPKGK TYLLKSIRFR 120 GPCKSLRSFQ ILGTLSASTK RSDYSNDKNH WLILEDVNNL SIDGGSAGIV DGNGKIWWQN 180 SCKIDKSKPC TKAPTALTLY NLNNLNVKNL RVRNAQQIQI SIEKCNSVDV KNVKITAPGD 240 SPNTDGIHIV ATKNIRISNS DIGTGDDCIS IEDGSQNVQI NDLTCGPGHG ISIGSLGDDN 300 SKAYVSGINV DGATLSETDN GVRIKTYQGG SGTAKNIKFQ NIRMDNVKNP IIIDQNYCDK 360 DKCEQQESAV QVNNVVYRNI QGTSATDVAI MFNCSVKYPC QGIVLENVNI KGGKASCKNV 420 NVKDKGTVSP KCP* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-83 | 64 | 429 | 376 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 8.0e-98 | 66 | 433 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-100 | 96 | 423 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-119 | 1 | 410 | 413 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 0 | 1 | 432 | 434 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA65072.1 | 0 | 1 | 433 | 1 | 433 | polygalacturonase [Brassica napus] |
| EMBL | CAA90272.1 | 0 | 1 | 433 | 1 | 433 | Polygalacturonase [Brassica napus] |
| EMBL | CAD21651.2 | 0 | 1 | 433 | 1 | 433 | endo polygalacturonase [Brassica rapa subsp. rapa] |
| RefSeq | NP_191310.1 | 0 | 1 | 432 | 1 | 430 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_850359.1 | 0 | 1 | 432 | 1 | 430 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1hg8_A | 2e-23 | 104 | 413 | 26 | 334 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 2iq7_G | 2e-23 | 152 | 422 | 62 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-23 | 152 | 422 | 62 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-23 | 152 | 422 | 62 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-23 | 152 | 422 | 62 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
