| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003318 |
| Family | CBM43 |
| Protein Properties | Length: 171 Molecular Weight: 18273.7 Isoelectric Point: 6.2206 |
| Chromosome | Chromosome/Scaffold: 07 Start: 12579403 End: 12580248 |
| Description | plasmodesmata callose-binding protein 5 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 36 | 118 | 2.2e-31 |
| WCVAKNNAEDSSLQTAIDWACGQGGADCGPIQQGRACNDPTDIQKMASYVFNNYYLKNGLADDACNFNNNAALTSINPSQGTC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 171 Download |
| MTLPHLHFSL LAATAIMLVA IADAQAGGQV LQAELWCVAK NNAEDSSLQT AIDWACGQGG 60 ADCGPIQQGR ACNDPTDIQK MASYVFNNYY LKNGLADDAC NFNNNAALTS INPSQGTCRY 120 PSSKRVSNGR VADDTSMGSG QADMSRGRRV STTWILLVFS ILMVTWIIHL * 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 1.0e-14 | 35 | 94 | 66 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-29 | 35 | 120 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM67357.1 | 0 | 1 | 169 | 44 | 218 | unknown [Arabidopsis thaliana] |
| EMBL | CAB68148.1 | 0 | 1 | 169 | 79 | 254 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567060.1 | 0 | 1 | 169 | 3 | 178 | PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5); callose binding / polysaccharide binding [Arabidopsis thaliana] |
| RefSeq | XP_002279275.1 | 0 | 18 | 168 | 20 | 171 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002525141.1 | 0 | 24 | 153 | 21 | 155 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 4e-18 | 33 | 122 | 10 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
