y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra003366 |
Family | PL4 |
Protein Properties | Length: 861 Molecular Weight: 97417.4 Isoelectric Point: 8.4876 |
Chromosome | Chromosome/Scaffold: 07 Start: 12858074 End: 12870720 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 56 | 626 | 0 |
NQVVVDNGIIQVTFSSPQGLITGIKYKGFDNVLNNKIKNRGLEGVKFNVINQTSEHVEISFSRAWKISQRGSLVPLNVDKRYIIRRGVSGIYMYAVLEKL KGWPTVDMDQTRIVFKLNTKFDFMAISDQRQKIMPSEIDRDITNKRANPLAYKEAVRFVNPQNRIFKGQVDDKYMYSMENKDNKVHGWISSDQRVGFWMI TPSDEFRVCGPLKQELTSHVGPTTLSMFTSLHYAGKDMNTTYTSMEPWKKVYGPVFVYLNSASSTNLLWTDAKRQMVEEVHSWPYDFVKSVDYPLHQQRG TVKGQFFVMDRYISKSKLFGKFAFVGLAVPGEAGSWQTENKGYQFWTTADRMGIFTITNVRPGSYNLYAWVSGHIGDYKYERDITITPGREIDVGAILYE PPRIGATLWEIGKPDRTAAEFYIPDPDPILSTKLYLNNSYQPQDRFRQYGLWDRYTALYPRNDLVYIVGVSDYKKDWFYAHVTRNAGNGTYQATTWQIVF SLKAVIKTGNYTFRMALAAATTANLSVRINEPKSKPIFLIGLIGQDNTIARHGIHGLYNLYDINVGGNLLR |
Full Sequence |
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Protein Sequence Length: 861 Download |
MAKKLIALAF TLIILFAVLT AIIGVHSRTS RNKLGIAKPE QKLASGRLTL KKVGPNQVVV 60 DNGIIQVTFS SPQGLITGIK YKGFDNVLNN KIKNRGLEGV KFNVINQTSE HVEISFSRAW 120 KISQRGSLVP LNVDKRYIIR RGVSGIYMYA VLEKLKGWPT VDMDQTRIVF KLNTKFDFMA 180 ISDQRQKIMP SEIDRDITNK RANPLAYKEA VRFVNPQNRI FKGQVDDKYM YSMENKDNKV 240 HGWISSDQRV GFWMITPSDE FRVCGPLKQE LTSHVGPTTL SMFTSLHYAG KDMNTTYTSM 300 EPWKKVYGPV FVYLNSASST NLLWTDAKRQ MVEEVHSWPY DFVKSVDYPL HQQRGTVKGQ 360 FFVMDRYISK SKLFGKFAFV GLAVPGEAGS WQTENKGYQF WTTADRMGIF TITNVRPGSY 420 NLYAWVSGHI GDYKYERDIT ITPGREIDVG AILYEPPRIG ATLWEIGKPD RTAAEFYIPD 480 PDPILSTKLY LNNSYQPQDR FRQYGLWDRY TALYPRNDLV YIVGVSDYKK DWFYAHVTRN 540 AGNGTYQATT WQIVFSLKAV IKTGNYTFRM ALAAATTANL SVRINEPKSK PIFLIGLIGQ 600 DNTIARHGIH GLYNLYDINV GGNLLRGLHY GDTNQCFDDG YRFKDTNECF VTGADSVTVS 660 ASHSMGAPYS NHNGHTVSFR SDQSADADFS EEDGYFSEEY EEEEKEMVGN ATNFLLGLCN 720 VKILYLSAKT LEGLTHKATS SPSLTHCPVK FLKILKFGEA CDDDDVDMVM EIVMINHFLQ 780 KMLNLEQLIV YYNTSIEDDL VEVSSQLQML PVVASSKCKI QNLSGFLAPV PVDVSLGYKC 840 CLSMEKKLDM RPNYLEETVI * 900 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
smart00579 | FBD | 4.0e-12 | 749 | 821 | 73 | + domain in FBox and BRCT domain containing plant proteins. | ||
cd10317 | RGL4_C | 2.0e-30 | 464 | 626 | 167 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10316 | RGL4_M | 6.0e-34 | 353 | 452 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 4.0e-66 | 56 | 319 | 287 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-75 | 42 | 225 | 204 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99719.1 | 0 | 25 | 625 | 29 | 643 | At2g22620 [Arabidopsis thaliana] |
EMBL | CAA76417.1 | 0 | 225 | 626 | 1 | 402 | MYST1 [Arabidopsis thaliana] |
RefSeq | NP_179847.1 | 0 | 25 | 625 | 29 | 643 | lyase [Arabidopsis thaliana] |
RefSeq | NP_195508.2 | 0 | 12 | 626 | 15 | 645 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002527245.1 | 0 | 58 | 626 | 2 | 588 | lyase, putative [Ricinus communis] |