| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003370 |
| Family | GH35 |
| Protein Properties | Length: 538 Molecular Weight: 59778.3 Isoelectric Point: 7.3919 |
| Chromosome | Chromosome/Scaffold: 07 Start: 12887057 End: 12890039 |
| Description | beta-galactosidase 7 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH35 | 5 | 176 | 0 |
| ENVFASQGGPIILAQIENEYGNVMGPYGESGKSYIKWCANMAQSLNVGVPWIMCQQNDAPQPMLNTCNGFYCDDFVPNNPNTPKMWTENWTGWFKQWGGK NSHRTTEDVAFSVARFFQRGGTFNNYYMYHGGTNADRTAGGPYITTSYDYDAPLDEYGNLNQPKYGHLKQLH | |||
| Full Sequence |
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| Protein Sequence Length: 538 Download |
| MVKKENVFAS QGGPIILAQI ENEYGNVMGP YGESGKSYIK WCANMAQSLN VGVPWIMCQQ 60 NDAPQPMLNT CNGFYCDDFV PNNPNTPKMW TENWTGWFKQ WGGKNSHRTT EDVAFSVARF 120 FQRGGTFNNY YMYHGGTNAD RTAGGPYITT SYDYDAPLDE YGNLNQPKYG HLKQLHDVLH 180 SMEKILTYGN ISTIDFGNSA SITTQTSMMV KKPNEAEDTP STLKWSWRPE NMDNFLLKGK 240 GESTQTQLFD QKVVTNEQSD YLWYMTTVKF KKRDPFLGKN MSLRVNSTAH VLHAFVNGKH 300 IGNQHVENGK FNYVFEKDVK FKSGRNVIAL LSITVGLAAT FKAPLGNDPV VVDLLGLGKG 360 TAWVNGNNIG RYWPAFISSE NGCAAKCNYR GPYHAEKCLT NCGEPTQRWY HVPRSFLNAE 420 GDNTLVLFEE MGGNPSLVSF QTTRVGSVCA NVYEKNSIEL SCDRKPISAI KFASFGNPYG 480 NCGSFEKGTC ESSNNTIDIL TQECVGKEKC SIDVSTEKFG APDCTGSVRR LAVEAIC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02140 | Gal_Lectin | 3.0e-16 | 460 | 537 | 81 | + Galactose binding lectin domain. | ||
| PLN03059 | PLN03059 | 7.0e-60 | 339 | 537 | 219 | + beta-galactosidase; Provisional | ||
| pfam01301 | Glyco_hydro_35 | 5.0e-79 | 8 | 176 | 184 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 1.0e-99 | 1 | 337 | 386 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN82062.1 | 0 | 20 | 537 | 148 | 773 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_683341.1 | 0 | 1 | 537 | 179 | 786 | BGAL15 (beta-galactosidase 15); beta-galactosidase [Arabidopsis thaliana] |
| Swiss-Prot | Q9C6W4 | 0 | 1 | 537 | 156 | 779 | BGL15_ARATH RecName: Full=Beta-galactosidase 15; Short=Lactase 15; Flags: Precursor |
| RefSeq | XP_002516256.1 | 0 | 1 | 337 | 181 | 571 | beta-galactosidase, putative [Ricinus communis] |
| RefSeq | XP_002516256.1 | 0 | 340 | 537 | 650 | 848 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 1e-18 | 10 | 373 | 149 | 546 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_B | 0.0000000000001 | 12 | 432 | 145 | 573 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_A | 0.0000000000001 | 12 | 432 | 145 | 573 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8c_B | 0.0000000000001 | 12 | 432 | 145 | 573 | A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose |
| PDB | 4e8c_A | 0.0000000000001 | 12 | 432 | 145 | 573 | A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| EV537111 | 207 | 1 | 207 | 0 |
| DY264749 | 351 | 16 | 312 | 0 |
| EW723760 | 201 | 1 | 201 | 0 |
| FR621447 | 187 | 2 | 188 | 0 |
| FC915116 | 306 | 16 | 267 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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