| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003475 |
| Family | GH17 |
| Protein Properties | Length: 367 Molecular Weight: 40494 Isoelectric Point: 10.2348 |
| Chromosome | Chromosome/Scaffold: 07 Start: 13380961 End: 13382330 |
| Description | Glycosyl hydrolase family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH17 | 46 | 361 | 0 |
| IGINYGRYGSNLPPPEALPSLVTSLSIKHVKTFDMDPRITTSFANTGISLSLCIPNDKIPLLSTNLSEADSIIRAFILPYHKTTIITSISVGNEVSLLPP FTPHLVSAVVNVHRAIKRYRLHKKIKVTTTHSLAILSRRFPPSTARFHNSIGESVLKPLVRFLQRTKSPLMVNVYPYLAYKQSFPSIPLDFALFQPVNGS KRRMYRDPYSGVAYTNLFDIMMDSVDSAVKALGLPKIPVVVSEIGWPSSGDPGEVAASLENARVFNQRLVEHLRRGEKKVTVYIFALFDEDQKSGATVEK HWGLLYGNGTKKYDLN | |||
| Full Sequence |
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| Protein Sequence Length: 367 Download |
| MMIPSFWILA IFSISMASSS TIPSLRGPGI GTNYGRYSSN LGVPEIGINY GRYGSNLPPP 60 EALPSLVTSL SIKHVKTFDM DPRITTSFAN TGISLSLCIP NDKIPLLSTN LSEADSIIRA 120 FILPYHKTTI ITSISVGNEV SLLPPFTPHL VSAVVNVHRA IKRYRLHKKI KVTTTHSLAI 180 LSRRFPPSTA RFHNSIGESV LKPLVRFLQR TKSPLMVNVY PYLAYKQSFP SIPLDFALFQ 240 PVNGSKRRMY RDPYSGVAYT NLFDIMMDSV DSAVKALGLP KIPVVVSEIG WPSSGDPGEV 300 AASLENARVF NQRLVEHLRR GEKKVTVYIF ALFDEDQKSG ATVEKHWGLL YGNGTKKYDL 360 NISPPV* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 5.0e-10 | 281 | 353 | 76 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-86 | 46 | 361 | 323 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28613.1 | 0 | 2 | 366 | 9 | 375 | unknown [Arabidopsis thaliana] |
| EMBL | CAB36529.1 | 0 | 46 | 360 | 25 | 341 | putative beta-1, 3-glucanase [Arabidopsis thaliana] |
| RefSeq | NP_191740.1 | 0 | 2 | 366 | 9 | 375 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_194413.2 | 0 | 46 | 360 | 25 | 341 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002514201.1 | 0 | 46 | 363 | 26 | 345 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 45 | 363 | 1 | 316 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
| PDB | 3f55_C | 0 | 45 | 363 | 1 | 316 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
| PDB | 3f55_B | 0 | 45 | 363 | 1 | 316 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
| PDB | 3f55_A | 0 | 45 | 363 | 1 | 316 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
| PDB | 3em5_D | 0 | 45 | 363 | 1 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
| Signal Peptide | |||||
|---|---|---|---|---|---|
| Cleavage Site | |||||
| 17 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CX270921 | 162 | 187 | 347 | 0 |
| BY808987 | 155 | 214 | 367 | 0 |
| CB259129 | 122 | 246 | 367 | 0 |
| CB259129 | 66 | 186 | 251 | 0 |
| CX270921 | 215 | 168 | 364 | 0.00000000003 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Arabidopsis lyrata | 324620 | ||||
| Arabidopsis thaliana | AT3G61810.1 | ||||
| Capsella rubella | Carubv10017450m | ||||
| Thellungiella halophila | Thhalv10006482m | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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