| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003485 |
| Family | GH28 |
| Protein Properties | Length: 459 Molecular Weight: 50877.3 Isoelectric Point: 6.507 |
| Chromosome | Chromosome/Scaffold: 07 Start: 13440691 End: 13442816 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 75 | 408 | 0 |
| DKGGAKLFVPAGQWLTGSFDLISHLTSENWPVVDPLPSYGRGRELPGRRHRSLIYGQNLTDVVITGENGTIDGQGSVWWDWFRHGELNYTRPHIVELINT TGLIISNLTFLNSPFWNIHPVYCRDVLVKNLTILAPLDSPNTDGVDPDSSTNVCIEDCYIVTGDDLVSIKSGWDEYGISYARPSSKIKINRLTGQTTSSS GIAIGSEMSGGVSDIYIKDLHLFNSNTGIRIKTSPGRGGYVRNVHVSNVKFHNVQKAIRFTGKYGEHPDENFDPKALPVIEKITFENINGEDIGVAGLLE GIEGDEFKNICFLNVTLTVKKNSKKAPWKCSHVR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 459 Download |
| MKRSFLLWYV LLVQAFFYGA WYSVGGSLHC EYSNSVILHR PHSVSITEFG AVGDGVTLNT 60 KAFQNALFYL NSFSDKGGAK LFVPAGQWLT GSFDLISHLT SENWPVVDPL PSYGRGRELP 120 GRRHRSLIYG QNLTDVVITG ENGTIDGQGS VWWDWFRHGE LNYTRPHIVE LINTTGLIIS 180 NLTFLNSPFW NIHPVYCRDV LVKNLTILAP LDSPNTDGVD PDSSTNVCIE DCYIVTGDDL 240 VSIKSGWDEY GISYARPSSK IKINRLTGQT TSSSGIAIGS EMSGGVSDIY IKDLHLFNSN 300 TGIRIKTSPG RGGYVRNVHV SNVKFHNVQK AIRFTGKYGE HPDENFDPKA LPVIEKITFE 360 NINGEDIGVA GLLEGIEGDE FKNICFLNVT LTVKKNSKKA PWKCSHVRGY SQWVSPEITC 420 DSFGESIFPE HSSDCFGLSE NNLEKSSGLS RSPWLLSW* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-29 | 38 | 364 | 338 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 4.0e-31 | 5 | 408 | 424 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 3.0e-33 | 37 | 432 | 416 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-38 | 128 | 364 | 247 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-52 | 44 | 329 | 323 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB71871.1 | 0 | 1 | 458 | 1 | 470 | putative protein [Arabidopsis thaliana] |
| EMBL | CBI37055.1 | 0 | 1 | 458 | 1 | 466 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_567126.1 | 0 | 1 | 458 | 1 | 471 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002273855.1 | 0 | 17 | 458 | 68 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 1 | 436 | 1 | 444 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.99965e-42 | 42 | 386 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.99965e-42 | 42 | 386 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.99965e-42 | 42 | 386 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.99965e-42 | 42 | 386 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-20 | 143 | 392 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
