y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra003491 |
Family | CE8 |
Protein Properties | Length: 591 Molecular Weight: 63137.2 Isoelectric Point: 9.8414 |
Chromosome | Chromosome/Scaffold: 07 Start: 13466232 End: 13468217 |
Description | VANGUARD 1 homolog 2 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 278 | 573 | 0 |
VVAKDGSGKFKTISEAVNACPDKNKGRCIIHIKAGTYNEVVRIPKKKNNIFMFGDGATKTIITFNKSVKLTPGTTTSLSATVQVESEGFMAKWIGFKNTA GPLGHQAVALRVNGDRAVIFNCRFDAYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLLLLRKGSPGQSNYVTADGNEKGAAVKIGIVLQNCRI MPDKDLIGDKGPKKVKSYLGRPWKKFSTAVIIGSEISASIEPEGWTEWKGEQNHKTAKYIEFNNRGPGAKTNVRPRWTKAAKSAAEVEGFTVANWV |
Full Sequence |
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Protein Sequence Length: 591 Download |
MPVGKVVISA ASVLLVVGVA IGVVTYVNRG DDGGGGGKDA SLNSHQKAVQ AICQTTTDQG 60 SCSKTLDPVK SDDPSKLIKA FLLATKDAIT KSSNFTATTE GGMGKNMNAT TKAVLDYCKR 120 VLTYALEDLE TIVEEMGADL QQSGSKLDQL KQWLTGVFNY QTDCLDDIEE VEFRKIMGEG 180 ISNSKVLTSN AIDIFHSVVT AMTQMGVKVD DMKNVMGGLG APARRLLGDI DQNGLPKWLS 240 GKDRKLMAKA GRGGGGAPRD DGIGEGGGGG GKIKATHVVA KDGSGKFKTI SEAVNACPDK 300 NKGRCIIHIK AGTYNEVVRI PKKKNNIFMF GDGATKTIIT FNKSVKLTPG TTTSLSATVQ 360 VESEGFMAKW IGFKNTAGPL GHQAVALRVN GDRAVIFNCR FDAYQDTLYV NNGRQFYRNI 420 VVSGTVDFIF GKSATVIQNS LLLLRKGSPG QSNYVTADGN EKGAAVKIGI VLQNCRIMPD 480 KDLIGDKGPK KVKSYLGRPW KKFSTAVIIG SEISASIEPE GWTEWKGEQN HKTAKYIEFN 540 NRGPGAKTNV RPRWTKAAKS AAEVEGFTVA NWVGPANWIQ EANVPVQLGL * 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02301 | PLN02301 | 8.0e-108 | 43 | 590 | 552 | + pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 2.0e-113 | 48 | 590 | 548 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02745 | PLN02745 | 9.0e-134 | 38 | 590 | 570 | + Putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 1.0e-134 | 278 | 574 | 303 | + Pectinesterase. | ||
PLN02197 | PLN02197 | 0 | 39 | 590 | 569 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAV91510.1 | 0 | 33 | 590 | 32 | 588 | VGD1-like protein 2 [Arabidopsis thaliana] |
GenBank | ABC25451.1 | 0 | 39 | 590 | 36 | 585 | pollen development related protein [Brassica rapa subsp. chinensis] |
RefSeq | NP_191776.1 | 0 | 33 | 590 | 32 | 588 | VGDH2 (Vanguard 1 homolog 2); enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
Swiss-Prot | P41510 | 0 | 39 | 590 | 36 | 584 | PME_BRANA RecName: Full=Probable pectinesterase/pectinesterase inhibitor; Includes: RecName: Full=Pectinesterase inhibitor; AltName: Full=Pectin methylesterase inhibitor; Includes: RecName: Full=Pectinesterase; Short=PE; AltName: Full=Pectin methylesterase; Flags: Precursor |
Swiss-Prot | Q42608 | 0 | 14 | 590 | 1 | 571 | PME_BRACM RecName: Full=Pectinesterase/pectinesterase inhibitor; Includes: RecName: Full=Pectinesterase inhibitor; AltName: Full=Pectin methylesterase inhibitor; Includes: RecName: Full=Pectinesterase; Short=PE; AltName: Full=Pectin methylesterase |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 278 | 590 | 10 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 273 | 590 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 1e-19 | 278 | 573 | 7 | 338 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 1e-19 | 278 | 573 | 7 | 338 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 1e-19 | 278 | 573 | 7 | 338 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |