| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003520 |
| Family | CE10 |
| Protein Properties | Length: 359 Molecular Weight: 40318 Isoelectric Point: 7.2593 |
| Chromosome | Chromosome/Scaffold: 07 Start: 13587591 End: 13588826 |
| Description | alpha/beta-Hydrolases superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE10 | 69 | 339 | 0 |
| LDSSTNLLTRIYLPAPLDPSRYGAVDLTEPLSTTEIVPVLVFFHGGSFTHSSANSAIYDTLCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALKWV KSRIWLRSGKDSDVYVYLAGDSSGGNIAHNVAVRATNEGVKVLGNILLHPMFGGVERTQSEKRLDGKYFVTVQDRDWYWRAFLPQGEDRDHPACNPFGPR GQCLEGVKFPKSLVVVAGLDLVQDWQLAYVDGLKKTGQDVNLLYLKQATIGFYFLPNNDHFRCLMDELKKF | |||
| Full Sequence |
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| Protein Sequence Length: 359 Download |
| MAAGNEVNLN ECKRIVPLNT WVLISNFKLA YTLLRRPDGS FNRHLAEFLD RKVPPNSFPL 60 DGVFSFDHLD SSTNLLTRIY LPAPLDPSRY GAVDLTEPLS TTEIVPVLVF FHGGSFTHSS 120 ANSAIYDTLC RRLVTICGVV VVSVDYRRSP EHRYPCAYDD GWNALKWVKS RIWLRSGKDS 180 DVYVYLAGDS SGGNIAHNVA VRATNEGVKV LGNILLHPMF GGVERTQSEK RLDGKYFVTV 240 QDRDWYWRAF LPQGEDRDHP ACNPFGPRGQ CLEGVKFPKS LVVVAGLDLV QDWQLAYVDG 300 LKKTGQDVNL LYLKQATIGF YFLPNNDHFR CLMDELKKFV HSIEDDSLSK SCPILLTP* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00975 | Thioesterase | 0.0004 | 116 | 215 | 101 | + Thioesterase domain. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa. | ||
| COG2272 | PnbA | 8.0e-8 | 106 | 196 | 104 | + Carboxylesterase type B [Lipid metabolism] | ||
| PRK10162 | PRK10162 | 1.0e-10 | 87 | 266 | 187 | + acetyl esterase; Provisional | ||
| COG0657 | Aes | 2.0e-33 | 15 | 324 | 315 | + Esterase/lipase [Lipid metabolism] | ||
| pfam07859 | Abhydrolase_3 | 1.0e-71 | 108 | 322 | 216 | + alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABG89394.1 | 0 | 1 | 341 | 1 | 341 | gibberellic acid receptor [Gossypium hirsutum] |
| GenBank | ABQ96123.1 | 0 | 1 | 342 | 1 | 342 | gibberellic acid receptor-b [Gossypium hirsutum] |
| GenBank | ACN86356.1 | 0 | 1 | 341 | 1 | 341 | GID1-1 [Gossypium hirsutum] |
| RefSeq | NP_191860.1 | 0 | 1 | 358 | 1 | 358 | GID1B (GA INSENSITIVE DWARF1B); hydrolase [Arabidopsis thaliana] |
| RefSeq | XP_002271700.1 | 0 | 1 | 342 | 1 | 342 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2zsi_A | 0 | 1 | 342 | 8 | 350 | A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Thermus Thermophilus Hb8 |
| PDB | 2zsh_A | 0 | 1 | 342 | 8 | 350 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 3ed1_F | 0 | 2 | 342 | 1 | 349 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 3ed1_E | 0 | 2 | 342 | 1 | 349 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 3ed1_D | 0 | 2 | 342 | 1 | 349 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| formononetin biosynthesis | RXN-3284 | EC-4.2.1.105 | 2-hydroxyisoflavanone dehydratase |
| formononetin biosynthesis | RXN-3625 | - | 2,7-dihydroxy-4'-methoxyisoflavanone dehydratase |
| isoflavonoid biosynthesis I | RXN-3284 | EC-4.2.1.105 | 2-hydroxyisoflavanone dehydratase |
| isoflavonoid biosynthesis II | RXN-3303 | EC-4.2.1.105 | 2-hydroxyisoflavanone dehydratase |
| isoflavonoid biosynthesis II | RXN-5502 | - | 2,7,5-trihydroxy-4'-methoxyisoflavanone dehydratase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES913054 | 282 | 4 | 285 | 0 |
| DT574934 | 321 | 19 | 339 | 0 |
| HO779605 | 342 | 1 | 342 | 0 |
| ES790010 | 343 | 1 | 342 | 0 |
| HO795605 | 340 | 2 | 340 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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