| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003545 |
| Family | GH35 |
| Protein Properties | Length: 386 Molecular Weight: 42654.4 Isoelectric Point: 7.3181 |
| Chromosome | Chromosome/Scaffold: 07 Start: 13718293 End: 13721890 |
| Description | beta-galactosidase 7 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 29 | 120 | 1.12104e-44 |
| TIDGHRRVLLSGSIHYPRSTPEMWPDLIKKGKEGGLDAIETYVFWNAHEPTRRQYDFSGKLDLIRFLKTIQDEGLYGVLRIGPYACAEWNYG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 386 Download |
| MVSLRFLLCF LFVSNVYATI VSHDGRAITI DGHRRVLLSG SIHYPRSTPE MWPDLIKKGK 60 EGGLDAIETY VFWNAHEPTR RQYDFSGKLD LIRFLKTIQD EGLYGVLRIG PYACAEWNYG 120 KPAGITGPIF ITGINGDETI VKDLSAHKWS YKTGLNGFDN QLFRTEAMSK WSVENVPFNR 180 TMTWYKATFK SPLGNDPVVV DLMGLGKGTA WVNGNNIGRY WPAFISSENG CDANCNYRGA 240 YHAEKCLTNC GEPTQRWYHV PRSFLNAEGD NTLVLFEEMG GNPSLVSFQT TRVGSVCANV 300 YENKIIELSC DRKPISAIKF ASFGNPNGNC GSFVKGTCES SNNTVDILTQ ECVGKEKCSI 360 DVSTEKFGAP DCSGAARRLA VEAIC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1874 | LacA | 1.0e-16 | 21 | 117 | 99 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam02140 | Gal_Lectin | 2.0e-17 | 308 | 385 | 80 | + Galactose binding lectin domain. | ||
| PLN03059 | PLN03059 | 1.0e-46 | 4 | 120 | 120 | + beta-galactosidase; Provisional | ||
| pfam01301 | Glyco_hydro_35 | 4.0e-52 | 27 | 120 | 94 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 6.0e-74 | 117 | 385 | 294 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI27773.1 | 0 | 123 | 385 | 575 | 835 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002276918.1 | 1e-30 | 51 | 120 | 1 | 70 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002276918.1 | 0 | 123 | 385 | 506 | 766 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002297749.1 | 0 | 2 | 120 | 6 | 124 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002297749.1 | 0 | 123 | 385 | 561 | 823 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4e8d_B | 2e-19 | 30 | 120 | 12 | 102 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 4e8d_A | 2e-19 | 30 | 120 | 12 | 102 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 4e8c_B | 2e-19 | 30 | 120 | 12 | 102 | A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Signal Peptide | ||||
|---|---|---|---|---|
| Cleavage Site | ||||
| 18 | ||||
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DW119397 | 265 | 123 | 385 | 0 |
| ES271360 | 156 | 231 | 386 | 0 |
| GR458543 | 146 | 241 | 386 | 0 |
| DT736904 | 269 | 122 | 385 | 0 |
| CX192788 | 202 | 142 | 339 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |