| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003555 |
| Family | GH28 |
| Protein Properties | Length: 448 Molecular Weight: 48614.1 Isoelectric Point: 8.4823 |
| Chromosome | Chromosome/Scaffold: 07 Start: 13758954 End: 13761059 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 78 | 411 | 0 |
| KTACSSKGKTRVLVPENYTSLVRPIDLSGPCKARLTLQISGTIIAPDDPDAWEGLNPRKWLYFHSVSRFTVEGGGTVNGMGQEWWRRSCKHNHSNPCRGA PTALTFHKCKNMRVENLSVIDSQQMHIAFTSCRRVTVSALKVIAPGTSPNTDGIHISASRSIVVDNSTVSTGDDCVSIVKNSSQISISNIICGPGHGISI GSIGKSKSWEEVKDVTVDTAFISDTANGVRIKTWQGGSGLVSKIIFRNINMNNVSNPIIIDQYYCDSKKPCANQTSAVSLEKISFANVHGTSATKQAIKI SCSDAMPCRDIVLQDIDLEPSKGDGYTESFCWEA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 448 Download |
| MSYLCSIVVT RLLLLVVFSL SLTASNANSF ESLLQLPRRP PRSTRTRPRS ERLIHVGHFG 60 AKGNGFTDDT KAFEDAWKTA CSSKGKTRVL VPENYTSLVR PIDLSGPCKA RLTLQISGTI 120 IAPDDPDAWE GLNPRKWLYF HSVSRFTVEG GGTVNGMGQE WWRRSCKHNH SNPCRGAPTA 180 LTFHKCKNMR VENLSVIDSQ QMHIAFTSCR RVTVSALKVI APGTSPNTDG IHISASRSIV 240 VDNSTVSTGD DCVSIVKNSS QISISNIICG PGHGISIGSI GKSKSWEEVK DVTVDTAFIS 300 DTANGVRIKT WQGGSGLVSK IIFRNINMNN VSNPIIIDQY YCDSKKPCAN QTSAVSLEKI 360 SFANVHGTSA TKQAIKISCS DAMPCRDIVL QDIDLEPSKG DGYTESFCWE AYGSSSGQVY 420 PPSCLSGDES FLEQSVRSGI ITSVSYI* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-76 | 55 | 426 | 373 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 9.0e-78 | 56 | 424 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-84 | 81 | 396 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-97 | 54 | 421 | 370 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 0 | 54 | 442 | 389 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD55489.1 | 0 | 25 | 443 | 26 | 457 | AC009322_29 Similar to polygalacturonases [Arabidopsis thaliana] |
| GenBank | ABM67700.1 | 0 | 12 | 440 | 15 | 440 | polygalacturonase [Citrus sinensis] |
| RefSeq | NP_565232.1 | 0 | 25 | 443 | 26 | 442 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002299601.1 | 0 | 30 | 441 | 30 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517603.1 | 0 | 29 | 438 | 11 | 418 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-25 | 148 | 395 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-19 | 147 | 399 | 73 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-19 | 147 | 399 | 73 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-19 | 147 | 399 | 73 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-19 | 147 | 399 | 73 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
