| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003668 |
| Family | GH17 |
| Protein Properties | Length: 122 Molecular Weight: 13634.3 Isoelectric Point: 8.9671 |
| Chromosome | Chromosome/Scaffold: 07 Start: 14353623 End: 14353988 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH17 | 1 | 82 | 4.9e-25 |
| MFDVVVDSFYSALEKLNYGGANVYVAETGWPTRGNPPYTSVENARTYNQGLLKKFTMGSTRATLRRPNVPVVTFFFEMFDEV | |||
| Full Sequence |
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| Protein Sequence Length: 122 Download |
| MFDVVVDSFY SALEKLNYGG ANVYVAETGW PTRGNPPYTS VENARTYNQG LLKKFTMGST 60 RATLRRPNVP VVTFFFEMFD EVEQGFGLSA VRFINALSSG SGYKMYCDRD QINSVKSQNN 120 R* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.005 | 19 | 87 | 81 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-21 | 1 | 88 | 95 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABN05913.1 | 2e-20 | 1 | 88 | 233 | 324 | Glycoside hydrolase, family 17 [Medicago truncatula] |
| RefSeq | NP_177901.1 | 2e-33 | 1 | 88 | 230 | 321 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_177902.1 | 1e-20 | 1 | 90 | 237 | 332 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002302261.1 | 3e-20 | 1 | 87 | 214 | 304 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002306606.1 | 7e-18 | 1 | 87 | 207 | 296 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0.0000000000003 | 1 | 88 | 210 | 299 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0.0000000000008 | 1 | 93 | 210 | 299 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0.0000000000008 | 1 | 93 | 210 | 299 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur7_B | 0.0000000000008 | 1 | 93 | 210 | 299 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0.0000000000008 | 1 | 93 | 210 | 299 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| JK804435 | 93 | 1 | 87 | 6e-21 |
| JK809880 | 94 | 1 | 88 | 6e-21 |
| JK802300 | 93 | 1 | 87 | 8e-21 |
| JK804836 | 94 | 1 | 88 | 1e-20 |
| JG451228 | 93 | 1 | 87 | 1e-20 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Carica papaya | evm.model.supercontig_49.127 | evm.model.supercontig_49.128.179.264 | evm.model.supercontig_49.128.179.264 | ||
| Cucumis sativus | Cucsa.141670.1 | Cucsa.142770.1 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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