| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004012 |
| Family | GH1 |
| Protein Properties | Length: 539 Molecular Weight: 61496.8 Isoelectric Point: 8.9 |
| Chromosome | Chromosome/Scaffold: 07 Start: 16290701 End: 16294183 |
| Description | thioglucoside glucohydrolase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH1 | 43 | 510 | 0 |
| KGFPKDFIFGVASSAYQACGRGRGLNVWDGFTHRYPEKGGPDLGNGDTTCESYTKWQKDIDILDEMNATGYRFSFAWSRIIPEGKVSRGVNKGGLKYYHK LIDGLIAKNITPFVTLYHWDIPQTLQDEYQGFLNRQVIDDFRDFADLCFKEFGGKVKNWLTLNQLYTVPTRGYSTAGADAPGRCSPKVDERCYGGNSSTE PYIVAHNQLLAHAAVFQRGIIGPVMITRWFLPFNETDRASIDATERMKEFFFGWYMEPLTRGRYPDIMRRMVGNRLPNFTEAEARLVAGSYDFLGLNYYV GQYVQPAPNPLPVTSERYTAMMDPGTTLTSVNARGEKIGPLFEDFQGSRIYYYPKGIYYVMDHFRTRYRNPLIYVTENGFTTPASENRPEAVADSKRIDY LCSHLCFLRKVIREKRVNIKGYFAWSLGDNYEFAKGFAVRFGLTYVNWTDVSDRNLKDSGRWYQRFIN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 539 Download |
| MKLRGLVLIV FLLAVVSCKA NGEITCEENE PFTCNNTARL NSKGFPKDFI FGVASSAYQA 60 CGRGRGLNVW DGFTHRYPEK GGPDLGNGDT TCESYTKWQK DIDILDEMNA TGYRFSFAWS 120 RIIPEGKVSR GVNKGGLKYY HKLIDGLIAK NITPFVTLYH WDIPQTLQDE YQGFLNRQVI 180 DDFRDFADLC FKEFGGKVKN WLTLNQLYTV PTRGYSTAGA DAPGRCSPKV DERCYGGNSS 240 TEPYIVAHNQ LLAHAAVFQR GIIGPVMITR WFLPFNETDR ASIDATERMK EFFFGWYMEP 300 LTRGRYPDIM RRMVGNRLPN FTEAEARLVA GSYDFLGLNY YVGQYVQPAP NPLPVTSERY 360 TAMMDPGTTL TSVNARGEKI GPLFEDFQGS RIYYYPKGIY YVMDHFRTRY RNPLIYVTEN 420 GFTTPASENR PEAVADSKRI DYLCSHLCFL RKVIREKRVN IKGYFAWSLG DNYEFAKGFA 480 VRFGLTYVNW TDVSDRNLKD SGRWYQRFIN VTSKNTANED FLRSSLSFKN KMKTLADA* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02849 | PLN02849 | 6.0e-103 | 45 | 524 | 495 | + beta-glucosidase | ||
| COG2723 | BglB | 3.0e-108 | 43 | 520 | 492 | + Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism] | ||
| PLN02814 | PLN02814 | 1.0e-111 | 1 | 512 | 530 | + beta-glucosidase | ||
| TIGR03356 | BGL | 7.0e-116 | 46 | 505 | 475 | + beta-galactosidase. | ||
| pfam00232 | Glyco_hydro_1 | 6.0e-180 | 41 | 510 | 483 | + Glycosyl hydrolase family 1. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX68547.1 | 0 | 1 | 538 | 1 | 548 | myrosinase [Brassica rapa var. parachinensis] |
| GenBank | ABS30827.1 | 0 | 17 | 538 | 17 | 546 | myrosinase [Brassica oleracea] |
| DDBJ | BAE16356.1 | 0 | 1 | 538 | 1 | 545 | myrosinase [Eutrema wasabi] |
| EMBL | CAA55685.1 | 0 | 1 | 538 | 1 | 547 | myrosinase [Brassica napus] |
| EMBL | CAA79990.1 | 0 | 17 | 538 | 17 | 544 | myrosinase, thioglucoside glucohydrolase [Brassica napus] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1myr_A | 0 | 23 | 510 | 3 | 500 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1dwj_M | 0 | 23 | 510 | 1 | 498 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1dwi_M | 0 | 23 | 510 | 1 | 498 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1dwh_M | 0 | 23 | 510 | 1 | 498 | A Chain A, Myrosinase From Sinapis Alba |
| PDB | 1dwg_M | 0 | 23 | 510 | 1 | 498 | A Chain A, Myrosinase From Sinapis Alba |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| glucosinolate breakdown | RXN-8134 | EC-3.2.1.147 | thioglucosidase |
| glucosinolate breakdown (via thiocyanate-forming protein) | RXN-12024 | EC-3.2.1.147 | thioglucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
