y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra004073 |
Family | PL1 |
Protein Properties | Length: 408 Molecular Weight: 44861.6 Isoelectric Point: 8.4273 |
Chromosome | Chromosome/Scaffold: 07 Start: 16674598 End: 16676106 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 122 | 326 | 0 |
QDEPLWIIFARDMVIKLKEELMMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHDCKKRGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVDH CSLSNCDDGLVDAIRGSTAITISNNYLTHHNKVMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSAAPTINSQG NRFLA |
Full Sequence |
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Protein Sequence Length: 408 Download |
MILLHQLSLS LFSCLFLVLA PTFTASNHVS DPELVVQEVN EKINASRRNL GVLSCGTGNP 60 IDDCWRCDPK WEKNRQRLAD CAIGFGKHAI GGRDGRIYVV TDSSDKDAVN PKPGTLRHAV 120 IQDEPLWIIF ARDMVIKLKE ELMMNSFKTI DGRGASVHIA GGACITVQYV TNIIIHGVNI 180 HDCKKRGNAY VRDSPSHYGW RTASDGDAVS IFGGSHVWVD HCSLSNCDDG LVDAIRGSTA 240 ITISNNYLTH HNKVMLLGHS DSYTRDKNMQ VTIAFNHFGE GLVQRMPRCR HGYFHVVNND 300 YTHWQMYAIG GSAAPTINSQ GNRFLAPNDH VFKEVTKYED APQSKWKNWN WRSEGDLFLN 360 GAFFTPSGGR ASSSYAKASS LSARPSSLVA SVTGNAGSLS CRKGSRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-25 | 146 | 324 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-70 | 139 | 324 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-78 | 133 | 328 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG28907.1 | 0 | 34 | 407 | 19 | 392 | AC008113_23 F12A21.12 [Arabidopsis thaliana] |
GenBank | AAM67091.1 | 0 | 21 | 407 | 20 | 406 | putative pectate lyase [Arabidopsis thaliana] |
EMBL | CBI14899.1 | 0 | 21 | 407 | 17 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_564906.1 | 0 | 21 | 407 | 22 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002275781.1 | 0 | 21 | 407 | 72 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 59 | 400 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 59 | 400 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 78 | 326 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 6e-16 | 137 | 398 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 6e-16 | 137 | 398 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |