| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004111 |
| Family | GH28 |
| Protein Properties | Length: 250 Molecular Weight: 26901.5 Isoelectric Point: 7.7074 |
| Chromosome | Chromosome/Scaffold: 07 Start: 16901599 End: 16902442 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 2 | 237 | 0 |
| GFAFVNNSRINGITSLNSKMGHFNFFSVHHFNITDVTITAPCDSPNTDGLKFGFCSNINISKAHIGTGDDCIAILSGTTNMDISDVNCGPGHGISVGSLG KNKEEKDVNGLTVRDIVFNGTSDGIRIKTWESSASKILVSNFVYENIQMINVGNPINIDQKYCPHPPCEKKGESHVQIQDLKLKNIYGTSTNKVAVNLQC SKSFPCKKVELIDINLEHKGVEGGPSTAVCKNVDGS | |||
| Full Sequence |
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| Protein Sequence Length: 250 Download |
| MGFAFVNNSR INGITSLNSK MGHFNFFSVH HFNITDVTIT APCDSPNTDG LKFGFCSNIN 60 ISKAHIGTGD DCIAILSGTT NMDISDVNCG PGHGISVGSL GKNKEEKDVN GLTVRDIVFN 120 GTSDGIRIKT WESSASKILV SNFVYENIQM INVGNPINID QKYCPHPPCE KKGESHVQIQ 180 DLKLKNIYGT STNKVAVNLQ CSKSFPCKKV ELIDINLEHK GVEGGPSTAV CKNVDGSARG 240 KMVPQHCLN* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-53 | 11 | 249 | 240 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 7.0e-54 | 34 | 245 | 212 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 2.0e-54 | 7 | 249 | 243 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-69 | 3 | 234 | 232 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 8.0e-85 | 5 | 247 | 245 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD17391.1 | 0 | 1 | 249 | 154 | 402 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_175003.1 | 0 | 1 | 249 | 154 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179147.1 | 0 | 1 | 249 | 154 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179149.2 | 0 | 1 | 249 | 154 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_181560.1 | 0 | 1 | 249 | 154 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-17 | 14 | 203 | 167 | 349 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1czf_B | 0.0000000000003 | 3 | 233 | 128 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.0000000000003 | 3 | 233 | 128 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1ib4_B | 0.000000000002 | 6 | 234 | 112 | 333 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1ib4_A | 0.000000000002 | 6 | 234 | 112 | 333 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FD533829 | 217 | 34 | 250 | 0 |
| EX751911 | 218 | 33 | 250 | 0 |
| FD953219 | 182 | 69 | 250 | 0 |
| EX088249 | 156 | 25 | 180 | 0 |
| EX088249 | 79 | 172 | 250 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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