| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004119 |
| Family | GH28 |
| Protein Properties | Length: 398 Molecular Weight: 43197.5 Isoelectric Point: 7.786 |
| Chromosome | Chromosome/Scaffold: 07 Start: 16945313 End: 16947386 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 55 | 385 | 0 |
| DSACRVEDSAMIYVPKGRYLIGRELRFEGESCRSREITLRVDGTLIGPQDYRLLGKEQNWFSFVGVHNVTVLGGSFDAKGSTLWSCKANGQNCPEGATTL RFMDSYNVKIIGVLSLNSQLFHIAINRCNNVKIEDIRIIAPDDSPNTDGIHIQKSTDIEVRNASIKTGDDCISIGPGTKNLMVDGITCGPGHGISIGSLA KDLEEEGVVNVTVKKAVFVRTDNGLRIKSWPRHSKGFVERVRFLGALMVNVSYPILIDQNYCPGDSYCPTEESGIKINDVIYSGIMGTSATKVAIKMDCS ERFPCTQIRMQAINLTYRGGAATTSCINASG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 398 Download |
| MASSLSLVHI FTILVTIIMS RFAQFDARTS LNVLSFGAKP DGVVDSTKAF SDAWDSACRV 60 EDSAMIYVPK GRYLIGRELR FEGESCRSRE ITLRVDGTLI GPQDYRLLGK EQNWFSFVGV 120 HNVTVLGGSF DAKGSTLWSC KANGQNCPEG ATTLRFMDSY NVKIIGVLSL NSQLFHIAIN 180 RCNNVKIEDI RIIAPDDSPN TDGIHIQKST DIEVRNASIK TGDDCISIGP GTKNLMVDGI 240 TCGPGHGISI GSLAKDLEEE GVVNVTVKKA VFVRTDNGLR IKSWPRHSKG FVERVRFLGA 300 LMVNVSYPIL IDQNYCPGDS YCPTEESGIK INDVIYSGIM GTSATKVAIK MDCSERFPCT 360 QIRMQAINLT YRGGAATTSC INASGKQLGL VIPNGCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-74 | 66 | 383 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-83 | 23 | 393 | 380 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-85 | 31 | 397 | 375 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 8.0e-89 | 29 | 396 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-129 | 3 | 397 | 396 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28449.1 | 0 | 21 | 397 | 21 | 397 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_176735.1 | 0 | 21 | 397 | 21 | 397 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002262690.1 | 0 | 32 | 397 | 33 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002315106.1 | 0 | 5 | 397 | 6 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524365.1 | 0 | 27 | 397 | 19 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 1e-20 | 127 | 382 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-20 | 127 | 382 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-20 | 127 | 382 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 1e-20 | 127 | 382 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 1e-20 | 127 | 382 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
