CAZyme Information

Basic Information
SpeciesBrassica rapa
Cazyme IDBra004121
FamilyGH20
Protein PropertiesLength: 535 Molecular Weight: 60196.9 Isoelectric Point: 7.4767
ChromosomeChromosome/Scaffold: 07 Start: 16957729 End: 16963868
Descriptionbeta-hexosaminidase 3
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH201764850
  TDQPRFSYRGLLIDTSRHYLPLPVMKNVIDSMTYTKLNVLHWHIVDTQSFPLEIPSYPKLWNGAYSPTQRYTFEDAAEIVNYAGRRGIHVLAEIDVPGHA
  LSWGKGYPSLWPSKNCQEPLDVSSDFTFKVIDGILSDFSKIFKFKFIHLGGDEVNTTCWSTTPRISKWLKKHRKTEAEAYEYFVLRAQKIALSHGYEIIN
  WEETFNNFGNKLNPKTVVHNWLGTGVVGRVTAAGLRCIMSNQDKWYLDHIDTPWQMFYANEPFEMIKDEKRQSLVLGGEVCMWGEHIDASDIQQTIWPRA
  AAAAERLWTP
Full Sequence
Protein Sequence     Length: 535     Download
MRGIATKISG LAPLFVLFIA GAVSSFEDIE KLRIWPLPAE VSHGGRRMYL SEDFKLVTEG    60
SKYEDPSGIL KEGFDRMLAV VRLSHVVSGH RNSSSSGGSA LLEGLHVIIS SSTDELEYGA    120
DESYKLVVAS REKPYAQLEA KSVYGALHGL QTFSQLCHFN MKKKVIEILM TPWNITDQPR    180
FSYRGLLIDT SRHYLPLPVM KNVIDSMTYT KLNVLHWHIV DTQSFPLEIP SYPKLWNGAY    240
SPTQRYTFED AAEIVNYAGR RGIHVLAEID VPGHALSWGK GYPSLWPSKN CQEPLDVSSD    300
FTFKVIDGIL SDFSKIFKFK FIHLGGDEVN TTCWSTTPRI SKWLKKHRKT EAEAYEYFVL    360
RAQKIALSHG YEIINWEETF NNFGNKLNPK TVVHNWLGTG VVGRVTAAGL RCIMSNQDKW    420
YLDHIDTPWQ MFYANEPFEM IKDEKRQSLV LGGEVCMWGE HIDASDIQQT IWPRAAAAAE    480
RLWTPYTKLA ENPDKVTTRL AHFRCLLNER GVAAAPLVGG GRVAPFEPGS CLAQ*         540
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd02742GH20_hexosaminidase3.0e-58183483323+
cd06563GH20_chitobiase-like2.0e-62181485347+
cd06570GH20_chitobiase-like_11.0e-69181485317+
pfam00728Glyco_hydro_203.0e-98181485335+
cd06562GH20_HexA_HexB-like3.0e-146181511350+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563beta-N-acetylhexosaminidase activity
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAB60911.101505341397ESTs gb
RefSeqNP_001045052.102553421526Os01g0891000 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_001055557.103253431531Os05g0415700 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_176737.2015341535HEXO3 (BETA-HEXOSAMINIDASE 3); beta-N-acetylhexosaminidase/ hexosaminidase [Arabidopsis thaliana]
RefSeqXP_002514769.103253427527beta-hexosaminidase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB2gk1_H0345207500B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
PDB2gk1_F0345207500B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
PDB2gk1_D0345207500B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
PDB2gk1_B0345207500B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
PDB2gjx_G0345207500B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
Metabolic Pathways
Pathway NameReactionECProtein Name
chitin degradation IIRXN-12625EC-3.2.1.52β-L-N-acetylhexosaminidase
chitin degradation IIRXN-12626EC-3.2.1.52β-L-N-acetylhexosaminidase
Signal Peptide
Cleavage Site
25
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
EX1190882981954920
EX1264022841003830
GR45283728312830
EX1293792641113740
DY0250702612755350
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_022_00071.4Aquca_022_00071.3Aquca_022_00071.2Aquca_022_00071.1Aquca_010_00682.1
Aquca_004_00645.1
Arabidopsis lyrata475658485946470561
Arabidopsis thalianaAT1G65590.1AT3G55260.1AT1G05590.1
Brachypodium distachyonBradi2g57420.1Bradi2g25310.1Bradi2g37460.1Bradi3g44607.1Bradi1g69660.1
Bradi1g23740.1
Brassica rapaBra014765Bra032460
Carica papayaevm.model.supercontig_197.26
Capsella rubellaCarubv10020116mCarubv10016974mCarubv10011603m
Chlamydomonas reinhardtiig11709.t1
Citrus clementinaCiclev10014808mCiclev10031174mCiclev10031139mCiclev10031669mCiclev10033772m
Ciclev10019509mCiclev10024601m
Citrus sinensisorange1.1g008945morange1.1g013337morange1.1g008821morange1.1g014971morange1.1g044344m
orange1.1g007722morange1.1g007610m
Cucumis sativusCucsa.165600.1Cucsa.178740.1Cucsa.165600.2.144.314Cucsa.165600.2.144.314Cucsa.177460.1
Cucsa.165600.2.312.421Cucsa.165600.2.312.421
Eucalyptus grandisEucgr.G02896.1Eucgr.L01476.1Eucgr.K02799.2Eucgr.K02799.1Eucgr.K02799.3
Eucgr.K02798.2Eucgr.K02798.1
Fragaria vescamrna26730.1-v1.0-hybridmrna02330.1-v1.0-hybrid
Glycine maxGlyma18g52290.1Glyma02g10570.1Glyma10g43710.1Glyma20g38400.1Glyma08g17200.1
Glyma08g16970.1Glyma15g41986.1
Gossypium raimondiiGorai.002G136400.2Gorai.002G136400.1Gorai.011G246500.1Gorai.012G068200.1Gorai.012G068200.2
Gorai.002G136400.3Gorai.012G068200.3Gorai.007G264000.1
Linum usitatissimumLus10003292Lus10030323Lus10022251Lus10030348Lus10007899
Malus domesticaMDP0000798095MDP0000262060.270.444MDP0000262060.270.444MDP0000564236MDP0000262060.174.257
MDP0000262060.174.257
Manihot esculentacassava4.1_033827mcassava4.1_033064mcassava4.1_004406mcassava4.1_007813mcassava4.1_023099m
cassava4.1_021615m
Medicago truncatulaMedtr2g062560.1
Mimulus guttatusmgv1a004365mmgv1a003720mmgv1a007861mmgv1a003512mmgv1a023788m
Oryza sativaLOC_Os01g66700.1LOC_Os05g34320.2LOC_Os05g34320.1LOC_Os05g02510.1LOC_Os05g34320.3
LOC_Os07g38790.1LOC_Os03g11980.1
Panicum virgatumPavirv00023753mPavirv00005093mPavirv00062644mPavirv00067910mPavirv00063863m
Pavirv00062646mPavirv00001875mPavirv00056279mPavirv00062645m.258.396Pavirv00062645m.258.396
Pavirv00060770mPavirv00016511mPavirv00054866mPavirv00049460mPavirv00062645m.174.254
Pavirv00062645m.174.254
Physcomitrella patensPp1s70_132V6.1Pp1s3_199V6.1
Phaseolus vulgarisPhvul.008G015400.1Phvul.007G010100.1Phvul.005G045300.1Phvul.005G043200.1
Picea abiesMA_177334g0010MA_271570g0010MA_92690g0010.179.289MA_92690g0010.179.289MA_92690g0010.297.429
MA_92690g0010.297.429
Populus trichocarpaPotri.008G079400.2Potri.008G079400.1Potri.010G211000.2Potri.010G211000.1Potri.010G211000.4
Potri.010G211000.3Potri.008G079400.5Potri.008G079400.3Potri.008G079400.4Potri.001G232800.1
Potri.001G232600.1
Prunus persicappa003880mppa002753m
Ricinus communis29929.m00450328180.m00037729616.m00021628180.m00037634575.m000024
47890.m000013
Setaria italicaSi001028mSi021738mSi024695mSi021693mSi029311m
Si034794m
Selaginella moellendorffii117332429308422139422155445016
422160429325441789422260
Sorghum bicolorSb09g020420.2Sb09g020420.1Sb09g001670.1Sb02g037280.1Sb01g042640.1
Thellungiella halophilaThhalv10018379mThhalv10010264mThhalv10007181mThhalv10007179m
Vitis viniferaGSVIVT01016639001GSVIVT01006264001GSVIVT01004010001GSVIVT01006000001
Volvox carteriVocar20013124m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)