y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra004202 |
Family | GH3 |
Protein Properties | Length: 753 Molecular Weight: 80799.2 Isoelectric Point: 5.6225 |
Chromosome | Chromosome/Scaffold: 07 Start: 17391847 End: 17394684 |
Description | beta-xylosidase 3 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 88 | 337 | 0 |
GVSRLGIPDYNWWSEALHGVSDVGGGSSFTGLVPGATSFPQVKLTAASFNASLFQAIGKVVSTEARAMYNVGAAGLTFWSPNVNIFRDPRWGRGQETPGE DPTLVSKYAVAYVKGLQGTDGGDPNRLKVAACCKHYTAYDVDNWKDVSRYTFNSVVNQQDMDDTFQPPFRSCVVDGNVARVMCSYNQVNGKPTCADPDLL SGVIRGQWKLNGYIVSDCDSVEVIYANQHYTKTPEEAVAKSMLAGLDLNC |
Full Sequence |
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Protein Sequence Length: 753 Download |
MSYHRQTRGN RALPSVSTLL LSILFFISKP SNAQSSSPVF ACDVITNPSL AGYGFCNTGL 60 KAEARVTDLV GRLTLVEKIG FLVSKSTGVS RLGIPDYNWW SEALHGVSDV GGGSSFTGLV 120 PGATSFPQVK LTAASFNASL FQAIGKVVST EARAMYNVGA AGLTFWSPNV NIFRDPRWGR 180 GQETPGEDPT LVSKYAVAYV KGLQGTDGGD PNRLKVAACC KHYTAYDVDN WKDVSRYTFN 240 SVVNQQDMDD TFQPPFRSCV VDGNVARVMC SYNQVNGKPT CADPDLLSGV IRGQWKLNGY 300 IVSDCDSVEV IYANQHYTKT PEEAVAKSML AGLDLNCDHF TGQHAMDAVD AGLVNESDVD 360 TAISNNFATL MRLGFFDGDP KKQPYGNLGP QDVCTAENQE LAREAARQGI VLLKNSDGSL 420 PFLPYAIKTV AVIGPNANVT DTMIGNYHGV PCKYTTPLQG LVETVSVTYQ KGCPDVACTE 480 ADIDSAASLA VLADAVVLVM GTDLSIERED HDRLDLLLPG KQQQLVTEVA NAANGPVVLV 540 IMSGGGLDVT FAKNNPKITS IMWVGFPGQA GGLAIADVIF GRYNPSGRLP MTWYPQSYVE 600 NLPMSNMNMR PDNSTGYPGR SYRFYTGETV YSFGDGISYT QFHHWLIRAP GFVSLGLDPS 660 HPCRSSKCLS VDATGTYCGK TVEVQLEVIN AGTREGSHTV FLFMTPPAVH RSPVKHLVTF 720 EKLLLGRTEM AGGGGWGGEA ASREDGNGGG EV* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK15098 | PRK15098 | 4.0e-22 | 519 | 725 | 215 | + beta-D-glucoside glucohydrolase; Provisional | ||
PRK15098 | PRK15098 | 8.0e-49 | 41 | 472 | 493 | + beta-D-glucoside glucohydrolase; Provisional | ||
COG1472 | BglX | 3.0e-55 | 90 | 474 | 390 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 2.0e-64 | 88 | 365 | 282 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PLN03080 | PLN03080 | 0 | 31 | 723 | 713 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A5JTQ3 | 0 | 14 | 729 | 9 | 730 | XYL2_MEDVA RecName: Full=Beta-xylosidase/alpha-L-arabinofuranosidase 2; AltName: Full=Xylan 1,4-beta-xylosidase/Alpha-N-arabinofuranosidase 2; Short=MsXyl2; Includes: RecName: Full=Beta-xylosidase; AltName: Full=1,4-beta-D-xylan xylohydrolase; AltName: Full=Xylan 1,4-beta-xylosidase; Includes: RecName: Full=Alpha-N-arabinofuranosidase; AltName: Full=Alpha-L-arabinofuranosidase; Short=Arabinosidase; Flags: Precursor |
DDBJ | BAE44362.1 | 0 | 7 | 731 | 8 | 737 | alpha-L-arabinofuranosidase [Raphanus sativus] |
RefSeq | NP_196535.1 | 0 | 10 | 731 | 5 | 730 | BXL3 (beta-xylosidase 3); hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | NP_201262.1 | 0 | 7 | 731 | 8 | 741 | XYL4; hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
RefSeq | XP_002513707.1 | 0 | 36 | 725 | 37 | 728 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 83 | 729 | 59 | 688 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3u48_A | 0 | 83 | 729 | 59 | 688 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3u4a_B | 0 | 83 | 729 | 59 | 688 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3u4a_A | 0 | 83 | 729 | 59 | 688 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 4i3g_B | 4e-36 | 64 | 472 | 52 | 441 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |