| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004215 |
| Family | AA5 |
| Protein Properties | Length: 594 Molecular Weight: 65569.2 Isoelectric Point: 8.6347 |
| Chromosome | Chromosome/Scaffold: 07 Start: 17472439 End: 17474455 |
| Description | glyoxal oxidase-related protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA5 | 2 | 592 | 0 |
| RASRRLLWKLSVIVLLALYSQPSFSEVENCPADAGSSDTGNRREAAELKPPDLRADGVDTDPTPKGPEMNWPGKWELFLKNSGVSAMHAILMPKINKVQF YDATIWRISKIKLPPGVPCHVYDTKTNAIDCWAHSVLVDIETGNIRPLALSTDTWCSSGGLTINGTLVSTGGFQGGGNTARYLSTCDNCGWVEYPTALAA RRWYSTQATLPDGSFIVVGGRDALNYEYINQEGVDNKKLYDSQLLRETDDPAENNLYPFVWLNTDGNLFMFANNRSILLNPKTNRVIREFPQLPGGARNY PGSASSALLPIRLDVQSPAVIPADVLICGGARQDAFYRAETKKIYEPALKDCQRISINSKNPVWITEAMPMPRVMSDAVLLPNGEVIIINGVRRGTSGWG NGRDPLFSPIIYAPDKPLGQRFKELAPSPIARVYHSIALALPDGKVLVGGSNTNDGYKFDVMFPTEVRLQKYSPPYLDPALADLRPSIVTTATPKQIRYG ERFNIRIHLNQKDVTKENIKVTMSAPPFTTHAVSMNMRLLILGIFDIKREVRDLHQIHAIAPPSGKVAPPGYYLLFVVYNGVPSVGEWIQI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 594 Download |
| MRASRRLLWK LSVIVLLALY SQPSFSEVEN CPADAGSSDT GNRREAAELK PPDLRADGVD 60 TDPTPKGPEM NWPGKWELFL KNSGVSAMHA ILMPKINKVQ FYDATIWRIS KIKLPPGVPC 120 HVYDTKTNAI DCWAHSVLVD IETGNIRPLA LSTDTWCSSG GLTINGTLVS TGGFQGGGNT 180 ARYLSTCDNC GWVEYPTALA ARRWYSTQAT LPDGSFIVVG GRDALNYEYI NQEGVDNKKL 240 YDSQLLRETD DPAENNLYPF VWLNTDGNLF MFANNRSILL NPKTNRVIRE FPQLPGGARN 300 YPGSASSALL PIRLDVQSPA VIPADVLICG GARQDAFYRA ETKKIYEPAL KDCQRISINS 360 KNPVWITEAM PMPRVMSDAV LLPNGEVIII NGVRRGTSGW GNGRDPLFSP IIYAPDKPLG 420 QRFKELAPSP IARVYHSIAL ALPDGKVLVG GSNTNDGYKF DVMFPTEVRL QKYSPPYLDP 480 ALADLRPSIV TTATPKQIRY GERFNIRIHL NQKDVTKENI KVTMSAPPFT THAVSMNMRL 540 LILGIFDIKR EVRDLHQIHA IAPPSGKVAP PGYYLLFVVY NGVPSVGEWI QIV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam09118 | DUF1929 | 7.0e-25 | 486 | 592 | 108 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
| cd02851 | E_set_GO_C | 3.0e-27 | 486 | 592 | 108 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
| pfam07250 | Glyoxal_oxid_N | 1.0e-117 | 88 | 331 | 249 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL84955.1 | 0 | 1 | 593 | 1 | 594 | AT5g19580/T20D1_100 [Arabidopsis thaliana] |
| RefSeq | NP_176897.1 | 0 | 1 | 593 | 1 | 615 | glyoxal oxidase-related [Arabidopsis thaliana] |
| RefSeq | NP_197459.1 | 0 | 1 | 593 | 1 | 594 | glyoxal oxidase-related [Arabidopsis thaliana] |
| RefSeq | XP_002331167.1 | 0 | 74 | 592 | 89 | 608 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002514260.1 | 0 | 69 | 592 | 91 | 612 | Galactose oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2eib_A | 5e-21 | 154 | 593 | 225 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant |
| PDB | 2eid_A | 5e-21 | 154 | 593 | 225 | 638 | A Chain A, Galactose Oxidase W290g Mutant |
| PDB | 2eic_A | 9e-21 | 154 | 593 | 225 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
| PDB | 1k3i_A | 1e-20 | 154 | 593 | 242 | 655 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
| PDB | 2vz3_A | 1e-20 | 154 | 593 | 225 | 638 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
