| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004254 |
| Family | PL1 |
| Protein Properties | Length: 407 Molecular Weight: 44695.7 Isoelectric Point: 8.6495 |
| Chromosome | Chromosome/Scaffold: 07 Start: 17666073 End: 17667563 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 121 | 325 | 0 |
| QEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGANVHIAGGACITVQYVTNIIIHGVSIHDCKKRGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVDH CSLSNCADGLVDVIHGSTAITISNNYLTHHDKVMLLGHSDSYTRDKNMQVTIAFNHFDEGLVQRMPRCRHGYFHVVNNDYTHWKMYAIGGSAAPTINSQG NRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 407 Download |
| MALLHLSLSL FSCLFLVLAP TYVASSHVSD PELVVQEVNQ HINASRRNLG VLSCGTGNPI 60 DDCWRCDPKW EKNRQRLADC AIGFGKRAIG GRDGKIYVVT DPSDKDAVNP KPGTLRHAVI 120 QEEPLWIIFA RDMVIKLKEE LIMNSFKTID GRGANVHIAG GACITVQYVT NIIIHGVSIH 180 DCKKRGNAYV RDSPSHYGWR TASDGDAVSI FGGSHVWVDH CSLSNCADGL VDVIHGSTAI 240 TISNNYLTHH DKVMLLGHSD SYTRDKNMQV TIAFNHFDEG LVQRMPRCRH GYFHVVNNDY 300 THWKMYAIGG SAAPTINSQG NRFLAPNDKV FKEVTKYEDA PQSKWKNWNW RSEGDLFLNG 360 AFFTPSGGRA SSKYAKASSL SARPSSLVAS VTGNAGALSC KKGSRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-26 | 145 | 323 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-73 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-80 | 132 | 327 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG28907.1 | 0 | 33 | 406 | 19 | 392 | AC008113_23 F12A21.12 [Arabidopsis thaliana] |
| GenBank | AAM67091.1 | 0 | 1 | 406 | 1 | 406 | putative pectate lyase [Arabidopsis thaliana] |
| EMBL | CAN76500.1 | 0 | 20 | 406 | 17 | 403 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI14899.1 | 0 | 20 | 406 | 17 | 403 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_564906.1 | 0 | 1 | 406 | 3 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 58 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 58 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-18 | 77 | 325 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 1e-16 | 136 | 397 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 1e-16 | 136 | 397 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
