| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004369 |
| Family | CBM43 |
| Protein Properties | Length: 571 Molecular Weight: 59742.3 Isoelectric Point: 6.1921 |
| Chromosome | Chromosome/Scaffold: 07 Start: 18291132 End: 18296284 |
| Description | |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 22 | 102 | 4.1e-27 |
| CVCKDGNEQVLQKAIDYACGAGADCSQIQQNGACFQPNTVKNHCDVAVNSYYQKKASSGATCDFNGAAVISTSPPSTASSC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 571 Download |
| MSVLLPLCLV LSMITYSNAA YCVCKDGNEQ VLQKAIDYAC GAGADCSQIQ QNGACFQPNT 60 VKNHCDVAVN SYYQKKASSG ATCDFNGAAV ISTSPPSTAS SCLTGSSSSG TPSTGTPTTG 120 TPSTGTPTTG TPSTGTPTTG TPTSGFPSTG TPSTGTPTAG MPTTGTPSTG MPNSGTPANG 180 MPTSSSSSVF PGTTLGPTGS GGFGDPNAGE KISVRTNTAF FLLTESHSLY SFLEPSLFSH 240 KRLQEYDSLR THTGSSAPSL PAPYVIEKDP ISLDLETVST LIESMKLVKA LALVEEPFAH 300 FHLIYRRRKR LLTKAAIACK AQAMEKNHKK GHNKKGFNLK KHRKGDPRPT NKGGNDEKPV 360 LFQLGSIAMV SDARLKADPE ITNSIPASPS LSSSSSSGNN NAKERKLSEL QSSSNTFGSQ 420 VSGVTHASSV EPALLSSPSV QLMDREGSDQ VSQRNSLPIL ERNLSAVSND SLFSLSIGDN 480 GITRDELFSY RDFKAGELLK SSELLSFCPS VDVPVDSSDI GKSFDLEDKA SELLESDSDD 540 KSSTSEVSWR NLGDNSDEAP SSTQSVSSPM * 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 4.0e-20 | 21 | 90 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-31 | 21 | 94 | 75 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG52483.1 | 0 | 324 | 531 | 1 | 235 | AC018364_1 hypothetical protein; 50238-51464 [Arabidopsis thaliana] |
| GenBank | AAG52501.1 | 0 | 1 | 304 | 1 | 372 | AC018364_19 unknown protein; 45065-49536 [Arabidopsis thaliana] |
| GenBank | AAM62861.1 | 0 | 1 | 224 | 1 | 214 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_177088.2 | 0 | 324 | 570 | 1 | 272 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_564957.1 | 0 | 1 | 224 | 1 | 214 | PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4); callose binding / polysaccharide binding [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 0.000000000003 | 20 | 97 | 12 | 90 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
