| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004655 |
| Family | GH28 |
| Protein Properties | Length: 429 Molecular Weight: 46134.9 Isoelectric Point: 8.3739 |
| Chromosome | Chromosome/Scaffold: 05 Start: 1254621 End: 1257403 |
| Description | polygalacturonase abscission zone A. thaliana |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 93 | 409 | 0 |
| WNKACSSIGAVNLLVPEGKTYFLKSIRLNGPCKSIITVQIFGILSASQKRSDYKDITKWITFDSVNSLSVDGGATGTVNGNGETWWQNSCKRNEAQTLTF YNLKNLRVNNLRVRNAQQIQISIEKCSNVQVSNVEVTAPADSPNTDGIHITNSQNIQISKSTIGTGDDCISIETGSQNVNINDLTCGPGHGISIGSLGDD NSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASDIIFQNIQMDNVKNPIIIDQDYCDKSKCTEQTSAVEVKNVVYRNISGTSASDIAITLNCSKNYP CQGIVLDKVNIKGGKGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 429 Download |
| MARCCQLLVG FLLWALLMLS WCEASRSSIN GYDHHHSYGN FKSNSLIKRR DDGTRLKSFA 60 RVSSRPPTTV SVSDFGAKGD GKTDDTQAFV NAWNKACSSI GAVNLLVPEG KTYFLKSIRL 120 NGPCKSIITV QIFGILSASQ KRSDYKDITK WITFDSVNSL SVDGGATGTV NGNGETWWQN 180 SCKRNEAQTL TFYNLKNLRV NNLRVRNAQQ IQISIEKCSN VQVSNVEVTA PADSPNTDGI 240 HITNSQNIQI SKSTIGTGDD CISIETGSQN VNINDLTCGP GHGISIGSLG DDNSKAFVSG 300 VTVDGAKLSG TDNGVRIKTY QGGSGTASDI IFQNIQMDNV KNPIIIDQDY CDKSKCTEQT 360 SAVEVKNVVY RNISGTSASD IAITLNCSKN YPCQGIVLDK VNIKGGKGSC SNANVMDKGI 420 VFPQCKST* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-84 | 75 | 415 | 349 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-96 | 75 | 423 | 364 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-107 | 97 | 415 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 5.0e-117 | 74 | 423 | 365 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 0 | 1 | 425 | 432 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC02763.1 | 0 | 1 | 428 | 1 | 426 | putative polygalacturonase [Arabidopsis thaliana] |
| GenBank | AAL84942.1 | 0 | 1 | 428 | 1 | 433 | At2g41850/T11A7.5 [Arabidopsis thaliana] |
| EMBL | CAC05657.1 | 0 | 1 | 428 | 1 | 434 | endopolygalacturonase [Brassica napus] |
| RefSeq | NP_191310.1 | 0 | 1 | 425 | 1 | 430 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_850359.1 | 0 | 1 | 428 | 1 | 433 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1czf_B | 2e-24 | 97 | 427 | 45 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 2e-24 | 97 | 427 | 45 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 2iq7_G | 2e-23 | 96 | 412 | 17 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-23 | 96 | 412 | 17 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-23 | 96 | 412 | 17 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
