| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004688 |
| Family | CBM43 |
| Protein Properties | Length: 181 Molecular Weight: 19302.5 Isoelectric Point: 5.0357 |
| Chromosome | Chromosome/Scaffold: 05 Start: 1362941 End: 1363797 |
| Description | plasmodesmata callose-binding protein 5 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 39 | 122 | 2.5e-32 |
| WCVAKNNAEDSSLQAAIDWACGPGGTDCAGIQQGGPCYDPSDIVKTASYVFNSYYLKNGPEDEACNFSNSAAVTSLNPSQGTCK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 181 Download |
| MIGYTPSQFH FHYLLMHLSL VITLTSAQFG GQASETDLWC VAKNNAEDSS LQAAIDWACG 60 PGGTDCAGIQ QGGPCYDPSD IVKTASYVFN SYYLKNGPED EACNFSNSAA VTSLNPSQGT 120 CKLPSSKRVS NGNIVDAATT STQGTSTQES SDFNRAGRIF SSIWSLPFII LGLVMINHHF 180 * 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 1.0e-20 | 38 | 109 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-35 | 38 | 122 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM67357.1 | 0 | 7 | 180 | 50 | 220 | unknown [Arabidopsis thaliana] |
| EMBL | CAB68148.1 | 0 | 7 | 180 | 85 | 256 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567060.1 | 0 | 7 | 180 | 9 | 180 | PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5); callose binding / polysaccharide binding [Arabidopsis thaliana] |
| RefSeq | XP_002279275.1 | 5.60519e-45 | 37 | 176 | 34 | 174 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002525141.1 | 0 | 27 | 159 | 21 | 152 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 7e-16 | 39 | 125 | 13 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
