| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004739 |
| Family | CE8 |
| Protein Properties | Length: 508 Molecular Weight: 55295.4 Isoelectric Point: 9.387 |
| Chromosome | Chromosome/Scaffold: 05 Start: 1587342 End: 1589335 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 202 | 489 | 0 |
| AVVAADGSGTHKTVGEALAASLASSGGRTVIHLKAGTYHENIKIPTKQKNVMLVGDGKGKTIIVGSRSNRGGWTTYQSATVAAMGEGFIARDITFVNSAG PKSEQAVALRVGADKSVVYRCSVEGYQDSLYTHSKRQFYRDTDITGTVDFIFGNSVVVFQSCNIVARKPLPGQRNFVTAQGRSHPEQNTGISIQNCKITA QSMTFLGRPWKEYSRTVVMQSFLDGSIHPSGWSPWSGSGSFGLKTLFYGEFENTGPGSSVSGRVKWAGYHPSLTVKEAEGFTVAGFIG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 508 Download |
| MILLIINFVN LFQTTSAVTN SNSNSHFSRF SRHGSSSSRT KQGFLASVQA SMNHAILARS 60 LAFNLTLSHR TTQVHMADPI HDCLELLDDT LDMLSRITMM QDKASSDDDE DVHTWLSAAL 120 TNQDTCQQSL QEKSNSYKHG IAMDFAARNL TGLLTNSLEL FASVKSKGRR LLSEQAHYPR 180 FVTWLKERRL LEASVEELKI DAVVAADGSG THKTVGEALA ASLASSGGRT VIHLKAGTYH 240 ENIKIPTKQK NVMLVGDGKG KTIIVGSRSN RGGWTTYQSA TVAAMGEGFI ARDITFVNSA 300 GPKSEQAVAL RVGADKSVVY RCSVEGYQDS LYTHSKRQFY RDTDITGTVD FIFGNSVVVF 360 QSCNIVARKP LPGQRNFVTA QGRSHPEQNT GISIQNCKIT AQSMTFLGRP WKEYSRTVVM 420 QSFLDGSIHP SGWSPWSGSG SFGLKTLFYG EFENTGPGSS VSGRVKWAGY HPSLTVKEAE 480 GFTVAGFIGG TMWLPSTGVS FDSGLVK* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 7.0e-148 | 44 | 505 | 496 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 1.0e-148 | 44 | 505 | 487 | + pectinesterase | ||
| PLN02301 | PLN02301 | 8.0e-156 | 82 | 505 | 435 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 1.0e-171 | 201 | 490 | 299 | + Pectinesterase. | ||
| PLN02170 | PLN02170 | 0 | 40 | 506 | 475 | + probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK69695.1 | 0 | 8 | 506 | 14 | 549 | putative pectin methylesterase LuPME1 [Linum usitatissimum] |
| EMBL | CBI39447.1 | 0 | 169 | 506 | 99 | 431 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_181833.1 | 0 | 1 | 506 | 17 | 517 | ATPMEPCRD; enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_191460.1 | 0 | 23 | 506 | 37 | 529 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002527752.1 | 0 | 111 | 506 | 174 | 582 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 201 | 505 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 201 | 505 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 4e-20 | 205 | 496 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 4e-20 | 205 | 496 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 4e-20 | 205 | 496 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
