| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004789 |
| Family | GH28 |
| Protein Properties | Length: 368 Molecular Weight: 39750.3 Isoelectric Point: 10.0685 |
| Chromosome | Chromosome/Scaffold: 05 Start: 1837991 End: 1839351 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 28 | 356 | 0 |
| SLACESRARAMVYIPRGTYLVRNLVFWGPCKNIITFKIDGTLVAPENYWSIGSSGYWILFAKVNRISVYGGILDARGAGYWSCRKKGGHCPQGARSISFS WCDNVLLSGLTSLNSQNIHVTVHHSSNVRIQNIRIRAPSGSPNTDGIIVQASSGVTISGGVIGTGDDCIALNPGSKNIWIERLNCGPGHGISIGSLGEYA NEEGVQNITVTSSIFTKTQNGVRIKSWGRPSNGFVRNVQFRNLVMRNVENPLIIDQNYCPSKKGCPNQSSGVKISGVTYANIKGTSATPVAMKLDCSGSN HCTGITLKNINLKYMRRSSASYCKNAHGR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 368 Download |
| MPSFNVQRYG ARGDGRTDAT EPFLTAWSLA CESRARAMVY IPRGTYLVRN LVFWGPCKNI 60 ITFKIDGTLV APENYWSIGS SGYWILFAKV NRISVYGGIL DARGAGYWSC RKKGGHCPQG 120 ARSISFSWCD NVLLSGLTSL NSQNIHVTVH HSSNVRIQNI RIRAPSGSPN TDGIIVQASS 180 GVTISGGVIG TGDDCIALNP GSKNIWIERL NCGPGHGISI GSLGEYANEE GVQNITVTSS 240 IFTKTQNGVR IKSWGRPSNG FVRNVQFRNL VMRNVENPLI IDQNYCPSKK GCPNQSSGVK 300 ISGVTYANIK GTSATPVAMK LDCSGSNHCT GITLKNINLK YMRRSSASYC KNAHGRASGV 360 MIPRNCM* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 7.0e-82 | 3 | 364 | 369 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-84 | 31 | 358 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 5.0e-87 | 4 | 367 | 372 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-92 | 2 | 366 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 4.0e-147 | 4 | 367 | 365 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_181916.1 | 0 | 1 | 367 | 28 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002331633.1 | 0 | 3 | 367 | 26 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 3 | 367 | 26 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529094.1 | 0 | 4 | 367 | 26 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529095.1 | 0 | 3 | 367 | 25 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-20 | 97 | 358 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-20 | 97 | 358 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-20 | 97 | 358 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-20 | 97 | 358 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-20 | 97 | 358 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CK276500 | 276 | 3 | 278 | 0 |
| DY281549 | 315 | 3 | 315 | 0 |
| JZ191937 | 299 | 69 | 367 | 0 |
| JZ194028 | 288 | 63 | 350 | 0 |
| JZ193571 | 286 | 3 | 287 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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