| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004790 |
| Family | GH28 |
| Protein Properties | Length: 368 Molecular Weight: 39401.1 Isoelectric Point: 10.0484 |
| Chromosome | Chromosome/Scaffold: 05 Start: 1846616 End: 1848000 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 28 | 355 | 0 |
| SLACGSEAQSMVYIPHGTYLVRNLVFWGPCKNIITFKIDGKLVAPKNYWSIGNSGYWILFAKVNRILVYGGTIDAKGAGYWSCRKKGGHCPQGARSISFS WCNNVLLSGLTSLNSQNIHVTVHHSSNVRIQNIRIRAPSRSPNTDGIIVQSSSGVTISGAVIGTGDDCIALNQGSVNIYIKRVLCGPGHGISIGSLGDHA DEEGVNNVTVTNSVFTKTRNGVRIKSWARPSTGFVRNVEFRNLVMRNVGNPLIIDQNYCPSGKGCPNQSSGVKISGVTFANIKGTSTTPIAMKLDCSGSH HCTEITLKNIKLTYMKGATTSYCKNAHG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 368 Download |
| MLSFNVQRYG ARGDGKTDST KPFSTAWSLA CGSEAQSMVY IPHGTYLVRN LVFWGPCKNI 60 ITFKIDGKLV APKNYWSIGN SGYWILFAKV NRILVYGGTI DAKGAGYWSC RKKGGHCPQG 120 ARSISFSWCN NVLLSGLTSL NSQNIHVTVH HSSNVRIQNI RIRAPSRSPN TDGIIVQSSS 180 GVTISGAVIG TGDDCIALNQ GSVNIYIKRV LCGPGHGISI GSLGDHADEE GVNNVTVTNS 240 VFTKTRNGVR IKSWARPSTG FVRNVEFRNL VMRNVGNPLI IDQNYCPSGK GCPNQSSGVK 300 ISGVTFANIK GTSTTPIAMK LDCSGSHHCT EITLKNIKLT YMKGATTSYC KNAHGGASGV 360 VVPMNCM* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-80 | 3 | 363 | 368 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-87 | 31 | 358 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 5.0e-90 | 4 | 367 | 372 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 6.0e-96 | 2 | 366 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 6.0e-141 | 4 | 367 | 365 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_181916.1 | 0 | 1 | 367 | 28 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002331634.1 | 0 | 3 | 367 | 26 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529094.1 | 0 | 4 | 367 | 26 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529095.1 | 0 | 3 | 367 | 25 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529097.1 | 0 | 3 | 367 | 24 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-24 | 95 | 340 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-23 | 94 | 358 | 74 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-23 | 94 | 358 | 74 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-23 | 94 | 358 | 74 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-23 | 94 | 358 | 74 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CK276500 | 277 | 2 | 278 | 0 |
| DY281549 | 316 | 2 | 315 | 0 |
| JZ191937 | 300 | 68 | 367 | 0 |
| JZ193571 | 287 | 2 | 287 | 0 |
| JZ194028 | 288 | 63 | 350 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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