| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004791 |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 42535.9 Isoelectric Point: 10.4909 |
| Chromosome | Chromosome/Scaffold: 05 Start: 1849377 End: 1850884 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 54 | 382 | 0 |
| WQAACRSAASVTVTVPRGSFLLKPVEFRGPCRSKITFQIYGTIVAPTDYRGLGNSGYWILFVKVNRISINGGTLDARGASFWACRKSGKSCPAGARSMTF NWANNVVVTGLTSINSQVTHLVINSCNNVVVRKVKLVAPDQSPNTDGLHVQNSAGVTVTDSTFQTGDDCISIGPGTRNLYMSKLNCGPGHGISIGSLGRD AKEAGVQNITLVNSVFSGSDNGVRIKSWARQSTGFVRNVLFQNLIMKNVQNPIIVDQNYCPTHQGCPKQGSGVKISQVVYRNIQGTSRTQHALKFDCSRS NPCQAIRLHDIKLTFNGRSATSQCKNIKG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| MDHISNKLVA ILLMFFSSIL LMRTSMAAYN YNVVKFGAKP DGRTDSTKAF LGAWQAACRS 60 AASVTVTVPR GSFLLKPVEF RGPCRSKITF QIYGTIVAPT DYRGLGNSGY WILFVKVNRI 120 SINGGTLDAR GASFWACRKS GKSCPAGARS MTFNWANNVV VTGLTSINSQ VTHLVINSCN 180 NVVVRKVKLV APDQSPNTDG LHVQNSAGVT VTDSTFQTGD DCISIGPGTR NLYMSKLNCG 240 PGHGISIGSL GRDAKEAGVQ NITLVNSVFS GSDNGVRIKS WARQSTGFVR NVLFQNLIMK 300 NVQNPIIVDQ NYCPTHQGCP KQGSGVKISQ VVYRNIQGTS RTQHALKFDC SRSNPCQAIR 360 LHDIKLTFNG RSATSQCKNI KGVKAGVVMP QGCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-95 | 58 | 381 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-100 | 32 | 391 | 367 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-104 | 33 | 394 | 371 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-107 | 31 | 393 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 0 | 14 | 394 | 383 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_181917.1 | 0 | 1 | 394 | 1 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002309713.1 | 0 | 11 | 394 | 9 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 7 | 394 | 3 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529096.1 | 0 | 4 | 394 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529098.1 | 0 | 11 | 394 | 5 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-21 | 66 | 380 | 57 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 2e-20 | 124 | 380 | 81 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 2e-20 | 124 | 380 | 81 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 2e-20 | 124 | 380 | 81 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 2iq7_G | 2e-19 | 44 | 380 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
