| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004892 |
| Family | CE8 |
| Protein Properties | Length: 1260 Molecular Weight: 141119 Isoelectric Point: 5.9324 |
| Chromosome | Chromosome/Scaffold: 05 Start: 2332987 End: 2338977 |
| Description | Transducin/WD40 repeat-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 196 | 485 | 0 |
| AVVAKDGSGNFRTIKDAVNAASGSGRFVIYVKQGVYSENLEIRKKNVMLRGDGKGRTIITGSRSVGGGSTTFNSATVAAVGDGFMARGITFRNTAGASNE QAVALRSGSDLSVFYQCSFEGYQDTLYVHSNRQFYRDCDIYGTVDFIFGNAAAVLQNCNIFARRPRSKTNTITAQGRSDQNQNTGIIIHNSRVTAASDLR PILGSTKTYLGRPWRQYSRTVFMKTSLDSLIDPRGWLEWNGNFALSTLFYAEFQNTGSGASTSGRVKWPGFRVLQSASEASRFTVGSFIA | |||
| Full Sequence |
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| Protein Sequence Length: 1260 Download |
| MFLCIFVAST VSGYNSKDVK AWCSQTPNPK PCEYFLTHNS GQKPIKSESE FLKISMKLAL 60 ERAILAKSHT STLGPKCRDT REKAAWEDCL KLYDVTVSKI NETMDPNVKC SKTDAQTWLS 120 TALTNLDTCR AGFLELGVTD IVLPLMSNNV SSLICNTLAI NKVPFNYTPP EKDGFPSWVK 180 PGDRKLLQSS TPGDNAVVAK DGSGNFRTIK DAVNAASGSG RFVIYVKQGV YSENLEIRKK 240 NVMLRGDGKG RTIITGSRSV GGGSTTFNSA TVAAVGDGFM ARGITFRNTA GASNEQAVAL 300 RSGSDLSVFY QCSFEGYQDT LYVHSNRQFY RDCDIYGTVD FIFGNAAAVL QNCNIFARRP 360 RSKTNTITAQ GRSDQNQNTG IIIHNSRVTA ASDLRPILGS TKTYLGRPWR QYSRTVFMKT 420 SLDSLIDPRG WLEWNGNFAL STLFYAEFQN TGSGASTSGR VKWPGFRVLQ SASEASRFTV 480 GSFIAGSSWI PSSVPFTSAP MTKKKSEAAN EDQTRDTKKK SVSAVKSSQK EKPVVSKQVK 540 SLKEEEEEDL LLDSATDSDY DGDSLSGSLN SDDFDSDVFD SEDDASQRET EGGDEDSSED 600 ELELHGNEDS DDDDEGEQVD SENDEEDGSD EEREVAEESD SSEDEVAPRN TVGDVPLEWY 660 KDEKHIGYDI TGKKITKKEK QDKLDSFLAN MDDSKNWRKI YDEYNDEEVE LTKEESKLIR 720 RMLKGEAPHA DFDPYAPYVD WFKWDDAIHP LSSAPEPKRR FIPSKWEAKK VVKYVRAIRK 780 GLIKFDKPEE EPNVYLLWGD DSASDQKSKH LTYIPPPKLK LPGHEESYNP SLEYIPTEEE 840 KAAYELMYEE DRPKFIPKRF TSLRSIPAYE NALKESFDRC LDLYLCPRVR KKRINIDPES 900 LKPKLPSRKD LRPYPNSCYL EYKGHTGAVT SVSPDCSGQW IASGSADGSV RIWEVETGRC 960 LKVWQFKEAV KCVAWNPLPD FPILAVAIGQ DLVILNTELG TDEEQQKIEE LLRLGTLPEQ 1020 DEAVAAIVSW LPDETYGGIK IKHFKNISYV DWHPRGDYLS AVMSAGETRG VVIHQLSMHK 1080 TQRLPIKMRG LPVCTLFHPT HRGMFIIATK KNVRVFNLQK RELAIKKLET GLREISSMAI 1140 HPGGDNLIVG SKEGKMCWFD MDLSSKPYKT LKNHPKDITN VAFHRSYPLF ASCSEDSTAY 1200 VFHGKVYSDL NENPLIVPLE ILRGHSTASN RGVLDCKFHP RQPWLFTAGA DSVIKLYCH* 1260 1320 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02713 | PLN02713 | 1.0e-149 | 1 | 499 | 568 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 1.0e-150 | 23 | 493 | 500 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 2.0e-153 | 79 | 497 | 438 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02995 | PLN02995 | 1.0e-170 | 1 | 498 | 522 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 195 | 487 | 298 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005515 | protein binding |
| GO:0005618 | cell wall |
| GO:0005634 | nucleus |
| GO:0006364 | rRNA processing |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD25679.1 | 0 | 504 | 1259 | 3 | 775 | putative WD-40 repeat protein [Arabidopsis thaliana] |
| DDBJ | BAE71307.1 | 0 | 558 | 1259 | 26 | 737 | putative WD-40 repeat protein [Trifolium pratense] |
| RefSeq | NP_181567.3 | 0 | 504 | 1259 | 3 | 753 | transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] |
| RefSeq | NP_566038.1 | 0 | 1 | 499 | 12 | 510 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002529002.1 | 0 | 524 | 1259 | 17 | 735 | ribosome biogenesis protein bop1, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 188 | 497 | 1 | 316 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 195 | 493 | 4 | 307 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 7e-32 | 195 | 458 | 5 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 7e-32 | 195 | 458 | 5 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 7e-32 | 195 | 458 | 5 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO425678 | 485 | 778 | 1260 | 0 |
| EX131623 | 276 | 184 | 459 | 0 |
| EG462293 | 282 | 168 | 449 | 0 |
| ES912840 | 276 | 1 | 276 | 0 |
| ES903383 | 283 | 1 | 283 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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