| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra004944 |
| Family | GH14 |
| Protein Properties | Length: 673 Molecular Weight: 75075.5 Isoelectric Point: 6.3055 |
| Chromosome | Chromosome/Scaffold: 05 Start: 2587410 End: 2590431 |
| Description | beta-amylase 7 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 233 | 650 | 0 |
| YVMLPLGVINMKCELADRDGLLKHLRILKSIQVDGVKVDCWWGIAECHSPQEYNWNGYRQLFQIVRDLNLKIQVLMSFHECGGNVGDDVCIPLPHWVAEI GRTNPDIYFTDREGRRNPECLSWGIDKERVLRGRTALEVYFDYMRSFRIELGEFVEDGVISMVEIGLGPCGELRYPSCPIKHGWRYPGVGEFQCYDKYLL KSLRKAAESRGHPFWARGPENAGSYNSQPQGTGFFCDGGDYDGLYGRFFLKWYSQVLIDHADKVLSLAKLVFDTSCIAAKLPDVHWWYRTASHAAELTAG FYNPSNRDGYAEIASTLKKHGAALSFVSGEVQVLNRPDDFSGALGEPEAVAWQVLNAAWDTDTPIARENSLPCHDRVGFNKMLESVKFPNDPDRRHLSSF AYSRLVPALMEGHNLVEF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 673 Download |
| MQKLLGASEE DEEEEMDADV KEEDDGNRGS HAASGSSNDE FMFHQSSMQD QVDTPGGSRR 60 SRPVEEKERT KLRERHRRAI TARILGGLRR HGNYNLRVRA DINDVIAALA REAGWVVLPD 120 GTTFPSKSQG TKPPAVVGGS SASHQSSPPA LRGGSLSGHR SPTELNTCRM KGVFAPTTPS 180 PYDVQSSELV GSLNKADGLI GCPVDVINSK QILEIPPNLT EQDFSGTPYV PVYVMLPLGV 240 INMKCELADR DGLLKHLRIL KSIQVDGVKV DCWWGIAECH SPQEYNWNGY RQLFQIVRDL 300 NLKIQVLMSF HECGGNVGDD VCIPLPHWVA EIGRTNPDIY FTDREGRRNP ECLSWGIDKE 360 RVLRGRTALE VYFDYMRSFR IELGEFVEDG VISMVEIGLG PCGELRYPSC PIKHGWRYPG 420 VGEFQCYDKY LLKSLRKAAE SRGHPFWARG PENAGSYNSQ PQGTGFFCDG GDYDGLYGRF 480 FLKWYSQVLI DHADKVLSLA KLVFDTSCIA AKLPDVHWWY RTASHAAELT AGFYNPSNRD 540 GYAEIASTLK KHGAALSFVS GEVQVLNRPD DFSGALGEPE AVAWQVLNAA WDTDTPIARE 600 NSLPCHDRVG FNKMLESVKF PNDPDRRHLS SFAYSRLVPA LMEGHNLVEF DRFVKKLHGE 660 AVMDHQHHHQ QV* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00197 | PLN00197 | 9.0e-132 | 230 | 657 | 435 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 5.0e-138 | 230 | 657 | 432 | + beta-amylase | ||
| PLN02801 | PLN02801 | 4.0e-170 | 229 | 660 | 439 | + beta-amylase | ||
| PLN02905 | PLN02905 | 0 | 32 | 664 | 652 | + beta-amylase | ||
| PLN02705 | PLN02705 | 0 | 32 | 660 | 633 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC28536.1 | 0 | 1 | 662 | 5 | 680 | putative beta-amylase [Arabidopsis thaliana] |
| DDBJ | BAE99337.1 | 0 | 1 | 664 | 5 | 682 | putative beta-amylase [Arabidopsis thaliana] |
| RefSeq | NP_182112.2 | 0 | 1 | 664 | 5 | 682 | BAM7 (BETA-AMYLASE 7); beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
| RefSeq | XP_002273843.1 | 0 | 33 | 666 | 51 | 698 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002511857.1 | 0 | 1 | 666 | 8 | 703 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdq_A | 0 | 229 | 660 | 11 | 444 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
| PDB | 1q6g_A | 0 | 229 | 660 | 11 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
| PDB | 1btc_A | 0 | 229 | 660 | 7 | 440 | A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodext |
| PDB | 1q6d_A | 0 | 229 | 660 | 11 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
| PDB | 1byd_A | 0 | 229 | 660 | 11 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX119447 | 257 | 390 | 646 | 0 |
| FG558188 | 232 | 373 | 604 | 0 |
| DK459578 | 244 | 40 | 283 | 0 |
| DK483375 | 244 | 40 | 283 | 0 |
| DK459578 | 31 | 284 | 314 | 0.0000000001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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