| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra005028 |
| Family | CBM43 |
| Protein Properties | Length: 449 Molecular Weight: 48804.4 Isoelectric Point: 5.2102 |
| Chromosome | Chromosome/Scaffold: 05 Start: 3062165 End: 3064137 |
| Description | glycosyl hydrolase family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 356 | 435 | 5.1e-29 |
| WCVVKQEATNEQLQANIDWVCSQGIDCKNISPGGICFDNMKARSSFVMNVYYQSKGGSEEACNFSGSGVVTTTNPSTSSC | |||
| GH17 | 30 | 338 | 0 |
| IGINYGTQGNLPPPQQVVEFIKTKTIIDSVKIYDANPDILRALSGTGIDVTIMVPNGNIPALANVENARQWVGANVLPFHQQTKIKYICVGNEILLTKDN NLISNLIPAMQSLLEALKVSGLPDMKVTTPHAFTVVYNQDAPSESRFNDEQKYIFAKILEFNRQAKSPFMISAYPYFMVDPNNVNYAIFGPSNAITDTKT GKTYNNMFDAVMDATYSAMNALGYGDVDIAVGETGWPSACDAAWCTPQNAANYNINIIKRSQNIGTPLMPNRHIDIYLFALFNEDGKPGPTYEKNWGLFK PDFSPVYDV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 449 Download |
| MATTPHFLTL PSLLLASVVI FLLSSKTSAI GINYGTQGNL PPPQQVVEFI KTKTIIDSVK 60 IYDANPDILR ALSGTGIDVT IMVPNGNIPA LANVENARQW VGANVLPFHQ QTKIKYICVG 120 NEILLTKDNN LISNLIPAMQ SLLEALKVSG LPDMKVTTPH AFTVVYNQDA PSESRFNDEQ 180 KYIFAKILEF NRQAKSPFMI SAYPYFMVDP NNVNYAIFGP SNAITDTKTG KTYNNMFDAV 240 MDATYSAMNA LGYGDVDIAV GETGWPSACD AAWCTPQNAA NYNINIIKRS QNIGTPLMPN 300 RHIDIYLFAL FNEDGKPGPT YEKNWGLFKP DFSPVYDVGV LRGSDTGPPP SSSEKWCVVK 360 QEATNEQLQA NIDWVCSQGI DCKNISPGGI CFDNMKARSS FVMNVYYQSK GGSEEACNFS 420 GSGVVTTTNP STSSCVMKNV EGGSVHGT* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0001 | 2 | 331 | 350 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 5.0e-23 | 355 | 424 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 9.0e-36 | 355 | 436 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 8.0e-88 | 30 | 338 | 316 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK76666.1 | 0 | 33 | 435 | 32 | 447 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
| GenBank | AAM66982.1 | 0 | 33 | 435 | 32 | 447 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_181494.1 | 0 | 33 | 435 | 33 | 440 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_181494.1 | 5e-35 | 351 | 437 | 455 | 543 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_191103.1 | 0 | 33 | 435 | 32 | 447 | glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 30 | 331 | 2 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3f55_C | 0 | 30 | 331 | 2 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3f55_B | 0 | 30 | 331 | 2 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3f55_A | 0 | 30 | 331 | 2 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3em5_D | 0 | 30 | 331 | 2 | 306 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
