| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra005140 |
| Family | AA1 |
| Protein Properties | Length: 577 Molecular Weight: 63421 Isoelectric Point: 9.8274 |
| Chromosome | Chromosome/Scaffold: 05 Start: 3679277 End: 3682262 |
| Description | Laccase/Diphenol oxidase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 25 | 269 | 0 |
| MVRHYKFNVVMKNITRLCSSKPTVTVNGRYPGPTIYAREDDTLLIKVVNHVKYNVSIHWHGVRQVRTGWADGPAYITQCPLQPGQVYTYNYTLTGQRGTL WWHAHILWLRATVHGAIVILPKRGVPYPFPKPDHEKVIVLAEWWKSDTENVINEALKSGLAPNVSDAHMINGHSGPVNNCPSQGYKLSVTNGKTYLLRLV NAALNEELFFKVAGHLFTVVEVDAVFVKPFKTATVLIAPGQTTNV | |||
| AA1 | 269 | 564 | 0 |
| VKPFKTDTVLIAPGQTTNVLLTTSKSAGKYLVTASPFMDSPIAVDNVTATATVHYSGTLSSSPTTLTLPPPQNATTIANNFTNSLRSLNSKKYPALVPTT IDHHLFFTVGLGLNPCPTCKAGNGSRVVASINNVTFTMPKTALLPAHYFNISGVFTTDFPKNPPHVFNYSGGSVTNMATETGTRLYKLPYNATVQLVLQD TGVIAPENHPIHLHGFNFFEVGRGLGNFNAKKDPSNFNLVDPVERNTIGVPSGGWVVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGKGPNQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 577 Download |
| MKSHMVWFLF LVSFLSMFPA PSESMVRHYK FNVVMKNITR LCSSKPTVTV NGRYPGPTIY 60 AREDDTLLIK VVNHVKYNVS IHWHGVRQVR TGWADGPAYI TQCPLQPGQV YTYNYTLTGQ 120 RGTLWWHAHI LWLRATVHGA IVILPKRGVP YPFPKPDHEK VIVLAEWWKS DTENVINEAL 180 KSGLAPNVSD AHMINGHSGP VNNCPSQGYK LSVTNGKTYL LRLVNAALNE ELFFKVAGHL 240 FTVVEVDAVF VKPFKTATVL IAPGQTTNVK PFKTDTVLIA PGQTTNVLLT TSKSAGKYLV 300 TASPFMDSPI AVDNVTATAT VHYSGTLSSS PTTLTLPPPQ NATTIANNFT NSLRSLNSKK 360 YPALVPTTID HHLFFTVGLG LNPCPTCKAG NGSRVVASIN NVTFTMPKTA LLPAHYFNIS 420 GVFTTDFPKN PPHVFNYSGG SVTNMATETG TRLYKLPYNA TVQLVLQDTG VIAPENHPIH 480 LHGFNFFEVG RGLGNFNAKK DPSNFNLVDP VERNTIGVPS GGWVVIRFRA DNPGVWFMHC 540 HLEVHTTWGL KMAFLVENGK GPNQSILPPP KDLPKC* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07732 | Cu-oxidase_3 | 2.0e-49 | 32 | 148 | 119 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
| PLN02191 | PLN02191 | 2.0e-57 | 6 | 566 | 601 | + L-ascorbate oxidase | ||
| PLN02604 | PLN02604 | 5.0e-79 | 4 | 554 | 575 | + oxidoreductase | ||
| TIGR03388 | ascorbase | 4.0e-80 | 26 | 554 | 563 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| TIGR03389 | laccase | 0 | 26 | 576 | 555 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC49536.1 | 0 | 9 | 576 | 7 | 557 | diphenol oxidase [Nicotiana tabacum] |
| RefSeq | NP_565881.1 | 0 | 1 | 576 | 1 | 558 | IRX12 (IRREGULAR XYLEM 12); laccase [Arabidopsis thaliana] |
| RefSeq | XP_002322961.1 | 0 | 8 | 576 | 6 | 557 | laccase 1a [Populus trichocarpa] |
| RefSeq | XP_002322962.1 | 0 | 7 | 576 | 5 | 557 | laccase 1b [Populus trichocarpa] |
| RefSeq | XP_002520425.1 | 0 | 7 | 576 | 6 | 556 | laccase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 24 | 554 | 1 | 521 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1asq_A | 0 | 24 | 554 | 1 | 521 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1asp_B | 0 | 24 | 554 | 1 | 521 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1asp_A | 0 | 24 | 554 | 1 | 521 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1aso_B | 0 | 24 | 554 | 1 | 521 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
