| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra005248 |
| Family | CE8 |
| Protein Properties | Length: 340 Molecular Weight: 37414 Isoelectric Point: 7.4597 |
| Chromosome | Chromosome/Scaffold: 05 Start: 4287418 End: 4288773 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 33 | 324 | 0 |
| LVVDLNGGGNFTTVQSAIDAVPDSSSFRTLIVINPGIYREKVTVHKKKTNVVLQGKGYQKTIIEWNDTALSSGGTFYSFSFAVYADNFVAHNVSFVNTAP EPRPEVKGAQAVAMRLQADKSAFYGCGFYSAQDTLLDSEGRHFFKECYIQGSIDFIFGNGRSIYQARRTCMSIAKETSSGISGIITAQARDSESDQTGFS FVNCTISGTGKIWLGRAWRTFSTVVFSNTYMSEVISPDGWNNFGNTTRDRTVTFGEHKCFGEGANYTKRVAYGKQLTDAEAAKFTDISFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 340 Download |
| MSMKVVSSLA CLFVTVLSLN EKYTHFHQAS LVLVVDLNGG GNFTTVQSAI DAVPDSSSFR 60 TLIVINPGIY REKVTVHKKK TNVVLQGKGY QKTIIEWNDT ALSSGGTFYS FSFAVYADNF 120 VAHNVSFVNT APEPRPEVKG AQAVAMRLQA DKSAFYGCGF YSAQDTLLDS EGRHFFKECY 180 IQGSIDFIFG NGRSIYQARR TCMSIAKETS SGISGIITAQ ARDSESDQTG FSFVNCTISG 240 TGKIWLGRAW RTFSTVVFSN TYMSEVISPD GWNNFGNTTR DRTVTFGEHK CFGEGANYTK 300 RVAYGKQLTD AEAAKFTDIS FIDGQQWLNQ SDIFLQAEL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02634 | PLN02634 | 6.0e-91 | 31 | 333 | 312 | + probable pectinesterase | ||
| PLN02671 | PLN02671 | 1.0e-91 | 30 | 328 | 309 | + pectinesterase | ||
| PLN02665 | PLN02665 | 9.0e-107 | 35 | 328 | 295 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 2.0e-121 | 22 | 328 | 322 | + pectinesterase family protein | ||
| PLN02304 | PLN02304 | 1.0e-132 | 32 | 332 | 304 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO22722.1 | 0 | 21 | 333 | 75 | 390 | putative pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_181209.1 | 0 | 21 | 333 | 75 | 390 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002264941.1 | 0 | 29 | 328 | 11 | 309 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326223.1 | 0 | 19 | 334 | 5 | 319 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519425.1 | 0 | 42 | 329 | 82 | 368 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 33 | 328 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 4.99983e-42 | 34 | 333 | 6 | 309 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 8e-18 | 40 | 317 | 15 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 8e-18 | 40 | 317 | 15 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 8e-18 | 40 | 317 | 15 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
