y
Basic Information | |
---|---|
Species | Brassica rapa |
Cazyme ID | Bra005252 |
Family | CE8 |
Protein Properties | Length: 407 Molecular Weight: 44911 Isoelectric Point: 6.1502 |
Chromosome | Chromosome/Scaffold: 05 Start: 4305566 End: 4307103 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 90 | 379 | 0 |
LTVDLNGCGNFSNVQSAIDSVPDLSPSKTLIIVNSGVYREKVTVNENKTNIVMQGRGYQNTSIEWNDTAKSAGGTAYSFSFAVLAANFTAYNISFKNNAP EPDPGEDDAQAVALKIEGDQCAFYGCGFYGAQDTLLDDRGRHFFKNCFIQGSIDFIFGNGRSLYQDCTINSIAKENTSGVSGSITAHGRQSEDEQTGFSF VNCKIDGSGNMWLGRAWGAYATVVFSNTYMSGIITPEGWNDWGDPTREKTVTFGEHKCYGEGANYKRRVSYGKQLTNSEASSFTDISYID |
Full Sequence |
---|
Protein Sequence Length: 407 Download |
MPIKPVVTTV IAIFFTILAL YTIPLPSSLS SIATTIITNP QLEPLSIYST FFGHRHHHHH 60 HHHHHHHVPI KCCEKWTSKL THLYKTSLVL TVDLNGCGNF SNVQSAIDSV PDLSPSKTLI 120 IVNSGVYREK VTVNENKTNI VMQGRGYQNT SIEWNDTAKS AGGTAYSFSF AVLAANFTAY 180 NISFKNNAPE PDPGEDDAQA VALKIEGDQC AFYGCGFYGA QDTLLDDRGR HFFKNCFIQG 240 SIDFIFGNGR SLYQDCTINS IAKENTSGVS GSITAHGRQS EDEQTGFSFV NCKIDGSGNM 300 WLGRAWGAYA TVVFSNTYMS GIITPEGWND WGDPTREKTV TFGEHKCYGE GANYKRRVSY 360 GKQLTNSEAS SFTDISYIDG DQWLSQTNIL SELTSEENID ELIGFN* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 3.0e-100 | 86 | 384 | 300 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 3.0e-103 | 88 | 385 | 305 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 6.0e-109 | 89 | 384 | 297 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 4.0e-131 | 85 | 384 | 307 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 3.0e-143 | 86 | 384 | 302 | + probable pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO22722.1 | 0 | 32 | 405 | 34 | 406 | putative pectinesterase family protein [Arabidopsis thaliana] |
EMBL | CBI30191.1 | 0 | 69 | 384 | 82 | 399 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_181209.1 | 0 | 32 | 405 | 34 | 406 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002264941.1 | 0 | 89 | 384 | 14 | 309 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326223.1 | 0 | 75 | 397 | 3 | 326 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 90 | 387 | 9 | 311 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7.00005e-41 | 92 | 389 | 7 | 309 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 6e-21 | 100 | 373 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 6e-21 | 100 | 373 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 6e-21 | 100 | 373 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |